Calothrix sp. NIES-2098: NIES2098_03840
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Entry
NIES2098_03840 CDS
T08374
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
caln
Calothrix sp. NIES-2098
Pathway
caln03410
Base excision repair
caln03430
Mismatch repair
caln03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
caln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NIES2098_03840
03430 Mismatch repair
NIES2098_03840
03440 Homologous recombination
NIES2098_03840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caln03400
]
NIES2098_03840
DNA repair and recombination proteins [BR:
caln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NIES2098_03840
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NIES2098_03840
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NIES2098_03840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BAY07269
LinkDB
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Position
complement(495448..497589)
Genome browser
AA seq
713 aa
AA seq
DB search
MLDVVRSETTKPRRRLPNQRWQIYPQKAEFAQKLAVASNISPIISQLLINRGIETLEAAQ
AFLEPESLILPAPLEEFPDLAISVELLQNAIASEEKIAICGDYDADGMTSTALLLRSLRT
LGAKVDYAIPSRMHDGYGINKRIVEEFHSEGVGLILTVDNGISAVEPIARARELGLKVIV
TDHHDIPQILPAANAILNPKLIAESSPYRGVAGVGVAYILAVSLAQQLGETRGLIQPMLA
LFTLGTIADLAPLTGVNRRWVKRGLQHLPKSKLPGIQALIQIAGVQASESIQNSKFKIQN
SELEIQNLGLDTNPKFKIQNPKSLKPEDIGFRLGPRINAIGRIGDPQIVIDLLTTDDMGI
ALERSMQCESVNQQRQEMCEQIEQEAIAFVETEFVTSLQQDRVLVVVQPNWHHGVIGIVA
SRLVERYGVPVFIGTYEDETHIRGSARGIPEFNVFEALQACHDLLGKYGGHKAAGGFSFP
AQNLPKVRSRLIEFANQCLEPQHLKPLLKIDTQVNFSEIDRQLYQQLNALHPCGIDNPDP
VFWTPNVQVVEQQIVGKGHIKLTLAQTIDRQQYKIKAIAWRWRDYFPLPSRVDVAYKLRE
NTFNGNTSIEMELIGVRLPTQSHLFLTSPQRPLRTTFEYKQRQYSCGIFQQGSLPELRIK
NPEGKVLVMQPGHTIGLLGNSRENAQEVDICQPQYDGIIQAALQALSVLSHES
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
gtgctagatgtagttcgctcagaaaccacaaaacctcgtaggcgcttaccaaatcaacgt
tggcaaatttatccgcaaaaagcagaatttgcccaaaaattggctgtagcgagtaatatc
tcccccattatcagccaactgctcattaaccggggtattgaaaccctagaagcagcacaa
gcatttttagaaccagaatctttaatcttacctgcgccattggaagaattcccagatttg
gcaattagtgtagagttactgcaaaatgcgatcgcttctgaagaaaaaattgctatttgc
ggtgactacgatgctgatgggatgactagcaccgctttactgttgcgcagtctccgcact
ttaggggctaaagttgattacgctatccccagccggatgcacgatggttatggcattaat
aaacggattgtcgaagaattccacagcgaaggcgtggggttaattctcactgtcgataat
ggtatctcggcagttgaaccaatagccagagccagagaactaggtttaaaggtcattgtt
accgaccaccacgacattccgcaaatattgccagcagcgaatgctattctcaaccccaaa
ctaatcgccgaatcttctccttaccggggtgtcgcaggtgtgggtgtcgcttatattttg
gcggtgtctctagcacaacagctaggagaaactagaggcttaattcagccgatgctagca
ttatttactctgggaacgatcgcagatttagctcccttaactggcgtcaaccgccgttgg
gtaaaacgtggtttacaacatctacccaagtccaaattacctgggatacaggcgttaatt
cagatagctggagtacaggcgagtgaatcaattcaaaattcaaaattcaaaattcaaaat
tcagaattagaaattcaaaatttaggacttgacactaatccaaaattcaaaatccaaaat
ccaaaatctctaaagccggaggatattggttttcgcctagggccaagaattaatgcaatt
ggtcggattggcgatccgcagatcgtaatcgatctgttaactacagatgatatgggaata
gcgctggaaagatcaatgcaatgcgaaagcgtgaaccagcaacgccaggaaatgtgcgag
caaattgaacaagaagcgatcgcttttgtggagactgaatttgttacctcactccagcaa
gaccgagtattagttgtagtccaaccaaactggcatcatggtgtaattggaattgttgct
tctcgcttggtagaacgctacggtgtcccagtgtttattggcacctatgaagatgagaca
cacattcgcggttcagcaagaggaattcctgaatttaatgtgtttgaggctttgcaagct
tgtcacgatttattaggtaaatatggcggacacaaagccgcagggggattttctttccca
gcgcagaatttaccaaaagtgcgatcgcgcctgattgaatttgctaatcaatgtctagaa
ccccaacaccttaagccactactcaaaattgatacccaagtaaattttagtgaaatcgat
cgccagctttatcaacagctaaatgctttacatccttgcggtatcgacaaccccgatcca
gtattttggacgcctaatgtccaagtagttgagcaacaaatagttggcaaaggacatatc
aaacttacccttgcgcaaactatcgatcgtcaacagtacaaaattaaagcgatcgcttgg
cgttggcgcgactatttccctctaccgtcgcgagtcgatgttgcttataaactgcgagaa
aatactttcaacggcaataccagcattgagatggaattaataggcgtgagacttccaaca
cagtctcacctatttttaacttctccacagcgtcccttaagaactacctttgagtacaag
cagcgccagtattcttgtggtatctttcaacagggttcgctaccagaattaagaattaaa
aatcctgaaggcaaagtcttagttatgcaaccaggacatacgattggtttactgggcaat
agtcgggaaaatgctcaagaggttgatatttgtcaaccacaatacgacggcattattcaa
gctgcccttcaggctttatcagtgctgagtcatgagtcctga
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