Calothrix sp. NIES-2098: NIES2098_03880
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Entry
NIES2098_03880 CDS
T08374
Name
(GenBank) nuclease SbcCD, D subunit
KO
K03547
DNA repair protein SbcD/Mre11
Organism
caln
Calothrix sp. NIES-2098
Brite
KEGG Orthology (KO) [BR:
caln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caln03400
]
NIES2098_03880
DNA repair and recombination proteins [BR:
caln03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NIES2098_03880
Archaeal homologous recombinant proteins
NIES2098_03880
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Gene cluster
GFIT
Motif
Pfam:
Metallophos
Metallophos_2
Motif
Other DBs
NCBI-ProteinID:
BAY07273
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Position
complement(504259..505512)
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AA seq
417 aa
AA seq
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MIKILHLSDIHMGSGFSHGRINPATGLNTRLEDFVNTLSLCIDRAIADEVDLVIFGGDAF
PDATPPPYVQEAFASQFRRLVDGNIPTVLLVGNHDQHSQGLGGASLCIYRTLGVRGFVVG
DTVTTHRIQTRNGKVQVVTLPWLTRSTLMTRQETESLSLAEVNQLLTERLQVVLESEVRR
LDPDVPTVLLAHLMADNAALGAERFLAVGKGFTLPLSLLTRPCFDYVALGHVHRHQNLNK
SNDPPVIYPGSIERVDFSEEKEDKGYVIIELEKGKANWEFCPLPVRTFRTIEVDLSKVED
PQAALMKAIAKYNIQDAVVRLIYKLRSEQLDLIDNSSLHSALSSAHTYTIQPELLSQLAR
PRIPELSASSSIDPMEALKTYLSNREDLKDIAGSMLEAAQKLLADDVEVWLEGATHD
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgattaaaatcctccatctttccgatatccacatgggtagcggtttctcccacggacgc
atcaatccagccacaggattaaacacgcgattggaggattttgtcaatacattatctcta
tgtattgaccgcgcgatcgcagatgaagtggatttagtgatatttggcggtgatgctttt
cctgatgcgacaccaccgccttacgtacaagaagcttttgctagtcaatttcgccgtctt
gtagatggcaatatccctacagtattgttagtaggcaatcacgaccaacattcccaagga
ttagggggtgcgagtttatgtatttaccgcacgttaggtgtgcgggggtttgttgttggg
gatacagtcaccacccaccgcatccaaactcgtaacggtaaagttcaagtggttactctt
ccttggctaacccgttctacgttgatgactcgccaagaaacggaaagtttgtcactagcg
gaagttaaccaactattaacagaacgcctgcaagttgttttagaatcagaagttcgccgt
ctcgatcccgatgttcccactgtacttttagctcacttgatggctgacaatgcagctttg
ggagccgaacgctttttagctgtaggtaaaggctttactctacctctatctttgctgaca
cgtccctgttttgattatgttgctttgggacacgtccaccgccaccagaatttaaataaa
tccaacgatccgccggtgatttatcccggaagcattgagcgagtagattttagcgaagaa
aaggaagacaaaggttatgtaattattgaactggagaagggtaaagctaattgggagttt
tgtcctttacccgtgcggacattccgaacaattgaggtagatttatccaaagtagaagat
ccgcaagcagcattaatgaaagcgatcgctaaatacaatattcaagatgctgtagttcgg
ttaatctataaactgcgctccgaacagttagatttaattgataattcctcgctgcatagt
gctttaagttccgcacacacctacaccattcaaccagaattgctgagtcagttagctaga
cctcgcattcccgaactgagtgcgagtagtagcattgaccctatggaagccttaaaaact
tacttaagtaatcgcgaagatctcaaagatatcgctggctccatgctagaagctgcacag
aaactacttgcagacgatgtagaagtctggctggaaggcgcaactcatgattag
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