Calothrix sp. NIES-2098: NIES2098_05150
Help
Entry
NIES2098_05150 CDS
T08374
Symbol
ybbB
Name
(GenBank) tRNA 2-selenouridine synthase
KO
K06917
tRNA 2-selenouridine synthase [EC:
2.9.1.3
]
Organism
caln
Calothrix sp. NIES-2098
Brite
KEGG Orthology (KO) [BR:
caln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
caln03016
]
NIES2098_05150 (ybbB)
Enzymes [BR:
caln01000
]
2. Transferases
2.9 Transferring selenium-containing groups
2.9.1 Selenotransferases
2.9.1.3 tRNA 2-selenouridine synthase
NIES2098_05150 (ybbB)
Transfer RNA biogenesis [BR:
caln03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
NIES2098_05150 (ybbB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhodanese
AAA_33
AAA_18
DUF1564
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAY07399
LinkDB
All DBs
Position
complement(622786..623859)
Genome browser
AA seq
357 aa
AA seq
DB search
MSPLVIYTRQPWTENYSEIIDVRSPSEFIEDHIPGAINLPVLNDAERAEVGTIYKQVCPF
TAKKIGAALVSRNIYQHLSQHFAAKEKDYRPLIYCWRGGQRSGSMALVLTQIGWRVSVID
GGYKTYRAYVRQQLEHLPKKFTYQILCGLSGSGKTYILDKMSQRNAQVLDLENLANHRGS
LLGGELQGKLAYQPSQKYFETLLLQKLQSFDPHQPVWIESESNKIGKVYLPQSLWNKMRQ
ANCIEIELPTAARVKFLLQEYTHLVNHPEILKQKLEKLKYRCGWEKLSQWYQLIDIGNWE
ILVQDLLHSYYDPIYKRSIKSNFNKAEKLLQISDLSDSSIDALLDTLLPNYIFSKMS
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgtcacccttagttatatatactcggcaaccctggactgaaaattatagtgaaatcatt
gatgtgcgttcgcctagcgaatttatagaagaccacattcctggtgcaattaatttacca
gtcttaaatgatgccgaacgcgctgaagtgggaacaatttataaacaagtttgccccttc
actgcaaaaaaaattggtgctgctttagtatctagaaatatctatcagcatctcagtcaa
cattttgctgctaaagagaaagactaccgtcctttaatttattgctggcggggtgggcag
cgttcgggtagcatggctttggtgctaacgcaaattggttggcgcgttagcgtgattgat
ggcggatacaaaacttaccgtgcttatgtacgccaacaactagaacatctgccaaaaaaa
tttacttatcagattttgtgcggtttaagtggtagcggtaagacttacattttagataag
atgagtcagcgaaacgctcaagttttagacttagaaaatttagctaatcatcgcggttct
ctcttgggtggagaattgcaaggaaaacttgcttaccaaccctcacaaaaatactttgaa
actcttttattacaaaaactgcaaagtttcgatccgcatcagccagtgtggatcgaatca
gaaagtaataaaattgggaaagtttatttgcctcagtctctatggaataaaatgaggcaa
gccaattgtatagagattgaactaccaacagcagctagagtcaagtttctcttacaagaa
tatactcatctagtaaatcatcctgagattttaaaacaaaagctggagaaacttaaatat
cgctgtggttgggagaaattgagccaatggtatcagctaattgatatcggtaattgggaa
atattggtgcaagacttattgcactcctattacgaccccatctataaacgttcaattaag
agtaattttaataaagctgaaaaacttctacagatttcagacttatctgatagtagtatt
gatgctttgctagatactttattgccgaattatatattctctaaaatgagctaa
DBGET
integrated database retrieval system
