Calothrix sp. NIES-2098: NIES2098_06660
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Entry
NIES2098_06660 CDS
T08374
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
caln
Calothrix sp. NIES-2098
Pathway
caln03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
caln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NIES2098_06660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caln03400
]
NIES2098_06660
Enzymes [BR:
caln01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
NIES2098_06660
DNA repair and recombination proteins [BR:
caln03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NIES2098_06660
Prokaryotic type
NIES2098_06660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
PTHB1_CtH
Motif
Other DBs
NCBI-ProteinID:
BAY07549
LinkDB
All DBs
Position
complement(804852..805535)
Genome browser
AA seq
227 aa
AA seq
DB search
MILSKLSPSWQTVLLEEFNKPYFSKLQSFLVEERQAHTVYPPEEDIFSAFELTPYEKVNV
LLLGQDPYHDENQAHGLCFSVKPGIKPPPSLSNIFKELQNDVGFNIPNHGYLASWAKQGI
LMLNAVLTVRAHTPNSHKNQGWETFTDAVISKVNQKPDPVVFVLWGGYAQKKLKLIDTTR
HQAIKSAHPSPLSARNGFFGSKPFSAINSALRSVGKPEIDWQLLDFD
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
ttgatactcagcaaactttctcctagttggcaaacagtactgttggaagagtttaacaaa
ccatactttagtaagcttcaaagttttttagtagaagaacgccaagcacacactgtatat
ccacctgaagaagatatattttccgcttttgaattgacaccttacgaaaaagtaaatgtc
ctgttacttggtcaagatccttaccacgatgagaaccaagcgcatggattatgcttttct
gtcaagcctggtatcaagccgcctccatccctgagtaatatctttaaagaactccaaaat
gatgttgggtttaatatcccgaatcatggctatttagcatcatgggcgaaacaagggatt
ttgatgctaaatgcagtgctaactgttagggcacacacacctaattctcacaaaaatcaa
ggttgggaaactttcaccgatgcggtaattagcaaagtcaatcaaaagccagatcctgtg
gtttttgtattgtggggtggatatgcacagaagaagctgaaattgatagatacaacgcga
catcaagcgatcaaatcagcgcatccttcaccactttctgcacgtaatggcttttttggt
agcaaacctttctcagctatcaactcagccttgcgttctgttggtaaaccagagattgat
tggcaacttcttgattttgattag
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