Calothrix sp. NIES-2098: NIES2098_09010
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Entry
NIES2098_09010 CDS
T08374
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
caln
Calothrix sp. NIES-2098
Pathway
caln03420
Nucleotide excision repair
caln03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
caln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NIES2098_09010
03430 Mismatch repair
NIES2098_09010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caln03400
]
NIES2098_09010
Enzymes [BR:
caln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NIES2098_09010
DNA repair and recombination proteins [BR:
caln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NIES2098_09010
MMR (mismatch excision repair)
Other MMR factors
NIES2098_09010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
DEAD
Viral_helicase1
AAA_30
ResIII
DUF3553
CarD_TRCF_RID
GA
Motif
Other DBs
NCBI-ProteinID:
BAY07779
LinkDB
All DBs
Position
complement(1086929..1089244)
Genome browser
AA seq
771 aa
AA seq
DB search
MSTTIDFLSHLNPSQRQAVEHYCGPLLVVAGAGSGKTRALTYRIANLILKHRVAPENILA
VTFTNKAAREMKERIQKIFAEQLAMSEYGQRFDLLTEYQQTKLRSQVYRDTIKDLWCGTF
HSLFSRILRFDIEKYQDEKGRRWSKNFSIFDESDAQSLVKEIVTKQLNLDDKKFDHRSMR
YAISNAKNQGFSPQEFESEQPNYRGRVIAQVYSSYQDRLAANNALDFDDLILIPTKLFQQ
NEQVLGYWHRKFSHILVDEYQDTNRTQYDLIRLLVTNGEDRKSEWNWQNRSVFVVGDADQ
SIYSFRMADFTILLEFQNDFGDGLPDDDTRTMVKLEENYRSCENILQAANELIENNTQRI
DKILKPTRGAGEQIYCHKADNELEEADFIIRQIRTLESQNPELNWGSFAILYRTNAQSRP
FEELLVKYQIPYTVVGGMRFYDRKEIKDVIAYLRAIANPADTVSLLRVINTPRRGIGKTT
IDALINASQQLGTTLWEILSDETSVNTLAGRGAKSVKAFAEMISRWQGEVGTLPAAEIVQ
GILEESGYVQDLLSQGTDESEDRIQNVQELYNAVLQFQEENEDATLQGFLQSTALSSDLD
NLKEGQTAVSLMTLHASKGLEFPVVFLVGLEQGLFPGYRSLSDPASLEEERRLCYVGITR
AQERLYLSHARERRLYGSREPAMRSQFLDEVPEELLTTGNKIRQTYTKSTAAVSNGKQNW
KVGDRVLHKSFGIGEITHVFGEGNKLSVAIKFANLGQKIIDPRVAQLQKVD
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgtccacaactattgacttccttagccaccttaaccccagccaacgtcaagccgtagaa
cattactgcggcccgttgctagttgtggctggtgcaggttctggtaaaacacgagccttg
acttaccgaattgctaacttgattctcaaacaccgtgtagcccccgaaaatatcttggcg
gtgacttttactaacaaagccgctagagagatgaaagaacggattcaaaagatatttgcc
gaacagttggcgatgtcggaatatggtcagcgttttgatttgttgacagaataccaacaa
actaaactgcgatcgcaagtttatcgtgacaccatcaaagatttgtggtgcggcactttt
cacagtttgttttctcgcatccttcgcttcgatattgagaagtaccaagacgaaaaaggc
cgccgttggagtaaaaatttctcgatatttgatgaatctgatgcacaaagcttggtcaaa
gaaattgtcactaaacagctaaacctagacgataagaagtttgaccatcgttctatgcgc
tatgcaattagtaacgccaaaaaccaaggcttttcaccccaagaatttgagagcgagcaa
cctaattatcgcggtagagtaattgctcaagtctatagttcttatcaagatagactggca
gcaaataacgctctcgattttgacgatctaattctgattcctactaaactatttcagcag
aacgaacaagttttaggttactggcatcgcaaattctctcatattcttgtagatgaatat
caggatactaatcgcactcaatacgatctcatccgcctgttagtgacaaatggcgaagat
agaaagagtgaatggaattggcaaaatcgctcggtgtttgttgtaggtgatgcagaccag
tcaatttactcgtttagaatggctgacttcaccatcttgctagaatttcagaatgatttc
ggcgatggtttacccgatgacgataccagaacaatggtgaagttagaagaaaactatcgc
tcttgtgaaaacattctgcaagctgctaacgaactgattgaaaataatacccaaagaatt
gacaagattctcaaaccaacgcggggtgcaggcgaacaaatttattgtcacaaagctgat
aatgaactagaagaagccgattttattattcgtcaaatccgcactttagaatctcaaaat
ccagaattaaactggggcagttttgcaattctttatcgtacaaatgctcaatctcgcccc
tttgaagaacttttggtgaaataccaaataccttacacagttgtcggaggaatgagattt
tacgatcgcaaagaaattaaagatgttatagcttatttaagagcgatcgctaatcctgct
gatactgtaagtttattgcgagtaattaatactcctcggcgtggtattggcaaaaccacc
attgatgctttgattaacgcttcccagcaacttggtacaactctttgggaaatattatca
gacgaaacatcagttaataccttagctggacgcggcgctaaatctgtcaaagcttttgca
gaaatgattagtcgttggcaaggagaagtaggaacgcttcctgcggcggaaattgttcaa
ggtatacttgaagaatctggttatgtgcaagacttactaagccagggtacggatgaatcg
gaagacagaatccaaaacgttcaagaactttacaacgccgtactgcaatttcaagaagag
aatgaagatgctactctgcaaggattcttacaaagtaccgccctcagttccgatttggat
aacttaaaagaagggcaaacagcagtgtctttaatgactttgcacgcttccaaaggtctg
gaatttcccgtagtctttttggtgggattagaacaaggactatttcccggctaccgttcg
ctgagtgaccctgcatctttagaagaagaacgccgtttgtgttatgtaggcattacccgc
gcccaagaaaggttatatttatcacacgcccgcgaacgccgcctctatggttcacgagaa
cccgccatgcgatcgcaatttttggacgaagtaccagaagaattattaactactggtaat
aagattcgtcaaacctatactaaatctactgctgctgtcagcaatggtaagcagaattgg
aaagtaggcgatcgcgttttacataaaagctttggtattggggaaattactcatgttttt
ggagaaggtaataagctttctgtagcaattaaatttgctaatttggggcaaaaaattatc
gaccccagagtagcccagttgcaaaaggttgattaa
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