Calothrix sp. NIES-2098: NIES2098_23320
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Entry
NIES2098_23320 CDS
T08374
Name
(GenBank) transcriptional-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
caln
Calothrix sp. NIES-2098
Pathway
caln03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
caln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NIES2098_23320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caln03400
]
NIES2098_23320
Enzymes [BR:
caln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NIES2098_23320
DNA repair and recombination proteins [BR:
caln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NIES2098_23320
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
PsbQ
AAA_22
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAY09170
LinkDB
All DBs
Position
2788264..2791764
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AA seq
1166 aa
AA seq
DB search
MAFSSIVRALARSPLTTELVSKLNRQQDLRLNGVPRFPKGLVASALAQNSEKNLFVVCAT
LEEAGRAYAQLEAMGWKNVYFYPTSEASPYEPFDPETEMTWGQMQVLADLVKIQESKVNG
SHSKIAIVATTGALQPHLPPPNAFIPFSLTLKKGMEFDLNTFSTKLATLGYERVPLVETE
GQWSRRGDIVDIFPVASELPVRLEWFGDEIEQIREFDPATQRSALDKIDQIILTPTSFAP
IILEALQNSAEYQGLSAKMNSGSELDTEEFEGSRRFLGLAFEQPASLLDYLSENTLVAID
EPEQCHAHSDRWVENAEEQWSLGTGEIDLGSVQLPKIHRSFEDCLAAAANFKQVYLSELA
EENTGINLASRPVPVTPHQFAKLADTLRQERDRNFSTWLISAQPSRSVSLLQEHDCPAQF
IPNPRDYQAIEKLQINHIPVALKYSGLAELEGFILPTFRLVVVTDREFYGQHSLATPSYI
RKRRQAASKQVDPNKLRQGDYVVHRSHGIGKFVKLESLTINDETRDYIVVQYADGLLRVA
ADQVGSLSRFRTTADKAPELHKMTGKAWENTKNKVRKAIKKLAVDLLKLYAARSQQQGFN
YPADMPWQEEMEDSFPYQPTTDQLKAVQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAI
FKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYPVNVGLLNRFRTAEERREIQKRLSTG
ELDVVVGTHQLLGKGVSFRDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRT
LYMSLSGIREMSLITTPPPSRRPIKTHLAQMNYETIRTAIRQELDRGGQVFYVVPRVEGI
EETTAKLREIIPSARFAVAHGQMDEGQLESTMLTFNNGEAEILVCTTIIESGLDIPRVNT
ILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPQQRALSDAARQRLRAIQEFTQLGSG
YQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEESIREIRGQEIPKVDDTQIDLN
LTAFIPADYIPDLDQKMSAYRAVAAAKSKEELTQIAGEWSDRYGGIPVSANQLLRVMELK
QLAKKLGFSRIKPENKQHIILETPMEEPAWNLLAANLPDHLKTRFVYSPGKVTVRGLAVL
KADQQLQSLIDALGRMQGAIPEAAMV
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggctttttcttctattgtgcgtgctttggcgcgatcgcctctaaccacagagctagtt
tccaaactcaatcgtcaacaggatttgcggctaaatggtgttccccgctttcctaagggt
ttagtcgcttccgcattagcacaaaattctgaaaagaatttatttgtagtatgtgccact
ttagaggaagctggacgcgcttatgcacaattagaagcgatgggatggaagaatgtgtat
ttttatcccacttctgaagcgtcaccttacgagccatttgaccccgaaacggaaatgacc
tggggacaaatgcaggtgttggctgatttggtcaagattcaagagtcaaaggtcaacggg
agtcattcaaaaatcgcgattgtggctactacgggggcgttacaacctcacttaccacca
ccaaatgctttcatccctttttctctgactttaaaaaagggtatggaatttgacttaaat
acctttagtactaaactcgctactttaggctatgagcgagtacctttagtggaaacggaa
gggcaatggagtcggcgtggtgatattgttgatatctttcctgtagcttctgagttacct
gtaaggttggaatggtttggtgatgaaatcgagcaaatccgagaattcgatcccgcaact
caacgttctgctcttgacaaaattgaccaaatcattcttacgcctactagttttgcgcca
attattttagaagcactgcaaaacagtgcggagtaccaagggctgagtgcgaagatgaat
tctggctcagaacttgatacagaagaatttgaaggtagccgtcgctttttggggttagct
tttgagcaacctgcatcacttttagactatttaagcgaaaatactctagttgccattgat
gagccagaacagtgtcatgctcatagcgatcgctgggtagaaaatgctgaggaacaatgg
tcgctgggaactggggaaatcgacctaggttctgtacaattaccgaaaatccatcggtct
tttgaagactgtttagcagcagcggcgaattttaaacaagtatatttatcggaactggca
gaagaaaacactggaattaatctagctagtagacctgttccggttacaccacaccagttt
gctaaacttgccgatacattgcgccaagaacgcgatcgcaatttttcgacttggctaatt
tcggctcaaccttcccgttctgtatcccttctgcaagaacacgattgtccggcgcagttt
atccctaatccccgcgactaccaagcaattgaaaagctacaaatcaaccatatacctgta
gccctgaaatattctggcttggcggaactcgaaggttttattttgccgacattccgctta
gtagtagtcactgacagggaattttatggacagcattccctagctacacctagctatatc
cgcaagcgtcgccaagctgcgtctaagcaagtcgatccgaacaaactgcgtcagggggat
tatgtagttcaccgcagtcacgggattggtaaatttgtcaagctagaaagtctgacaatt
aatgacgaaacccgtgattatatcgtggtgcagtatgctgacggcttgctgagagttgca
gccgatcaagtaggttctttatcgcgcttccgcactaccgccgataaagcacccgaactg
cacaaaatgacgggtaaagcttgggagaataccaagaacaaagtccgcaaagccatcaag
aaattggcagtggacttgctgaaattgtatgcagcgcgatcgcaacaacaaggctttaac
tacccagcggatatgccttggcaagaggaaatggaagattctttcccttaccaaccgaca
accgatcagttaaaagctgtacaagatgtcaaaagagatatggaaagcgatcgcccaatg
gatcgcttagtttgtggcgatgtcggtttcgggaaaacagaagtagcaattcgcgccatt
tttaaagctgtcaccgcaggtaaacaagtcgccttacttgcacctactaccattctcacc
cagcaacattaccataccctcaaagaacgctttgccccctacccggtgaatgttggctta
ctcaaccgcttccgcactgctgaagaacggcgagaaattcaaaagcggttatcaacggga
gagttagatgtagtcgttggtacacaccaacttttaggcaaaggtgtcagcttccgcgat
ttagggctgttggtagtcgatgaagaacaacgctttggcgttaaccaaaaagagaaaatt
aaaagcctaaaaactcaagtggatgtgctgacactctccgctactcccattccccgtact
ttgtatatgtctttgtccggtattcgggaaatgagtttaattaccacaccacccccatcc
cggcgaccgattaaaactcatctcgcccagatgaattacgaaactatccgtacagccatc
cgtcaagaactagacagaggcggtcaggtattttacgtagtgccgcgggtcgagggaatt
gaagagacaacagccaaattgcgagaaatcatcccctcagcgagatttgctgtggctcac
ggtcaaatggatgaagggcagttagaatcaaccatgctcaccttcaacaatggtgaagca
gaaattttagtttgtacgacaattattgaatctggtttagatattcccagagttaacacc
atcttaattgaagatgctcaccgctttggtttatcacagctgtaccaattacgcggtcgt
gtcggacgtgcgggaattcaagctcatgcctggttattttatccccagcaacgagcatta
tctgatgctgcaaggcagagattgcgggcaattcaggaatttacccaactaggttcggga
tatcagctagcaatgcgcgatatggaaattcgcggtgtaggtaacttactaggtgcagaa
caatccggtcaaatggatgcgatcggctttgatttgtatatggaaatgttggaagaatcg
attcgcgaaatccgcggccaggaaattcccaaagttgacgatacccaaatcgacctcaac
ctcacagcctttattcccgccgattacatccccgacttagatcaaaagatgagcgcttac
cgtgcagtagcggcggcgaaatccaaagaagaattgacacagattgcaggagaatggagc
gatcgctatggtggaattcccgtaagcgctaatcaattattgcgcgttatggaactcaaa
caactagcaaagaaattaggatttagccgcattaaaccagaaaacaaacagcacatcatt
ttagaaaccccaatggaagaaccagcttggaatttactggcggcgaacttaccagatcat
ctgaaaacgcgatttgtctactctcctggtaaggtgacggtgcgaggtttagctgttctt
aaagcagatcaacaattgcaaagtttaattgatgctttagggcgaatgcagggggcgatt
cctgaagccgctatggtttaa
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