Calothrix sp. NIES-2098: NIES2098_38490
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Entry
NIES2098_38490 CDS
T08374
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
caln
Calothrix sp. NIES-2098
Brite
KEGG Orthology (KO) [BR:
caln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
caln03016
]
NIES2098_38490
Enzymes [BR:
caln01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
NIES2098_38490
Transfer RNA biogenesis [BR:
caln03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NIES2098_38490
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
BAY10673
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All DBs
Position
4658858..4659487
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AA seq
209 aa
AA seq
DB search
MTLQDFQVSDRDLSDAALSQYLKSEAIAVDTETMGLLPQRDRLCLVQLCNQEGQVTAIRI
AKGQTTAPNLKKLLEAVNVLKIFHFARFDIATLRYNLGINVQPIFCTKIASKLARTYTNR
HGLKDVVQELEKVELDKSAQSSDWGNADNLSVEQLSYAANDVRYLLSVQQKLINMLKREE
RWQLAQECFQVLPIIVSLDLLQFKDLFEH
NT seq
630 nt
NT seq
+upstream
nt +downstream
nt
atgactttacaagattttcaggtaagcgatcgcgaccttagcgacgctgcactatcccaa
tatctaaaatcagaggcgatcgctgttgatacagaaacaatgggattgttaccacagcgc
gatcggctttgtctcgtccaactgtgcaatcaagaaggtcaagtaactgcaattcgcatt
gccaaaggacaaaccacagcaccaaacttaaaaaaacttttggaagcagtaaatgtttta
aaaatatttcactttgcacgttttgatattgctactttgcgttacaacctaggaattaac
gttcaacctattttttgtaccaaaatagcctctaaattagctcgtacttacaccaatcga
cacggattgaaggatgtcgtgcaagagttggaaaaagtagaactggataaaagcgctcaa
agttctgattggggtaacgctgataatttatcagtagaacaactaagttatgctgctaac
gatgttcgttatttactcagcgtacaacaaaagctgattaacatgctaaaaagagaagaa
cgttggcaactagctcaagagtgttttcaagttttaccaataattgtatctttagactta
ttgcaatttaaggatttatttgaacactag
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