Calothrix sp. NIES-2098: NIES2098_46390
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Entry
NIES2098_46390 CDS
T08374
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
caln
Calothrix sp. NIES-2098
Pathway
caln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES2098_46390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caln03019
]
NIES2098_46390
03009 Ribosome biogenesis [BR:
caln03009
]
NIES2098_46390
Enzymes [BR:
caln01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NIES2098_46390
Messenger RNA biogenesis [BR:
caln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NIES2098_46390
Ribosome biogenesis [BR:
caln03009
]
Prokaryotic type
rRNA processing factors
NIES2098_46390
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
BAY11456
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All DBs
Position
5551646..5553724
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AA seq
692 aa
AA seq
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MPKQIIIAEQHQIAAVFSEDQIQELVVATGHHQIGDIYLGVVENVLPGIDAAFVNIGDPE
RNGFIHVTDLGPLKLKRTAAAITELLAPQQKVLVQVMKEPTGTKGPRLTGNITMPGRYVV
LMPYGRGVNLSRRIKSESERNRLRALAILIKPAGMGLLVRTEAEGKPEEAIIEDLELLQR
QWEAIQQEAHSTRAPALLNRDDDFIQRVLRDMYGADVNRIVVDSSTGLKRVKQYLQNWSG
GQTPQGLLIDHHRDRSPILEYFRINAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSG
SFTRSATARETVLWTNCEAATEIARQMRLRNIAGVIVVDFIDMESRRDQLQVLEHFNKAL
KADKARPQIAQLTELGLVELTRKRQGQNIYELFGDTCPTCGGLGHTVRLPGETESRLPTP
TEIPERFVSLPHREPREPRLPVARTPEPRESYDGFGESFDSEADLGALHLMNHPSYQELS
DRDKRRTRTRRSRIGIGGANGKDEGRVVSNPLAFGTESDLDIDADSELATTPEIPAPNLN
KQPWTDRAERTKITKAEPVKPVVEPPEIRTVEMTLEEQDVFALMGVSPLVKLDREVKNPK
SVIINIVQPGQLPTQPPEPALDAASPDRTSSEVIVVKVPTPQLDLEPKSSPQPVIEPSGF
TALADESEASSASSASRRRRRRSSAVDGTEDS
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagcaaattattatcgcggaacagcatcaaattgctgctgtcttttcagaagat
caaatacaagaacttgttgtagccacaggtcatcaccaaatcggtgacatatacctaggt
gtagtagaaaatgtattaccaggtatcgatgcagcttttgtgaatattggcgacccagag
cgtaacggttttattcatgtaactgacttggggccgttaaagctcaaacgtacagcagca
gctattacagaattattagcaccacagcaaaaagtgttggtgcaagtgatgaaagagcca
acggggacaaaaggcccaaggcttacaggtaatatcaccatgcccggacgttatgtagtc
ctcatgccctatggtaggggtgtgaatttgtcccggcggattaagagtgaaagcgaacgt
aaccgactacgggcactggcaattttaatcaaacccgccggcatgggtttactggtgcgt
acagaagcggagggtaagccagaagaagcaattattgaagatttagaactattgcaaagg
caatgggaagctattcaacaagaagctcattctacccgcgcgccagcattgctgaatcga
gacgatgattttattcagcgcgtattgcgagatatgtacggcgcagatgtgaatcgcatt
gtggtcgattccagtactggtttgaaacgagtaaaacagtatttgcaaaactggagtggt
ggacaaacaccgcagggattgttaattgaccatcatcgcgatcgctcgccaatattagaa
tacttccgcattaatgccgcgattcgcgaagccctcaaacctagggtagacttaccttct
ggaggctacattatcattgagcctacagaagcattaacagtcatagatgttaactccggc
tcatttacgcgatcggcaacagccagagaaacagtactgtggactaactgcgaagccgcc
acagaaattgcccgtcagatgcgtctgcggaatattgctggagttatcgttgtagatttc
attgatatggaatcgcgacgcgatcaactgcaagttctggaacactttaacaaagctctg
aaagcagacaaagctcgtccgcaaattgcccaactcaccgaactgggtttagtagaactt
acccgcaagcgccaaggtcaaaatatttacgaattatttggggacacttgtccaacgtgc
ggtggtttaggacatacagtgcgtctgcctggagaaactgaaagcagattgcccacacca
acagaaattcctgagcgtttcgtatctctgccgcatcgagaaccacgagaaccgcgtctg
ccagttgcgcgcacgcccgaaccacgggaaagctacgatggatttggggaatcattcgat
agcgaagctgatttgggtgctttgcatttgatgaatcatcccagctatcaagaactgagc
gatcgtgataagcgccgtacccgtactcgtcgcagtcggattggcattggtggcgcgaat
ggcaaagatgaaggtcgggtggttagcaatcctctagcttttggtactgagtcagatctg
gatattgatgcagatagcgaactagctacaacaccagaaattcctgcaccaaatctgaac
aaacaaccttggactgacagagcagaacggactaaaattactaaagcagagccagtcaaa
ccagtggtagaaccaccggagattagaactgtagaaatgaccctagaagagcaggatgtt
tttgctttaatgggagtttctcccttggtgaagttagatagggaagtgaaaaatcccaag
tctgtaattattaatattgttcaaccagggcaacttccaactcagcctccagaaccagcg
ttagatgctgctagccccgacagaaccagcagtgaagtcattgtagtcaaagtgcctaca
ccacaactcgatctagaaccgaaatcttcaccccaaccagtaattgaaccatcaggattc
actgcgcttgcagatgaaagcgaagccagtagcgcttcttccgccagccgtcgccgtcgt
cgtcgctcttctgcggtagatggaacagaagatagttaa
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