Calothrix sp. NIES-2098: NIES2098_47960
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Entry
NIES2098_47960 CDS
T08374
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
caln
Calothrix sp. NIES-2098
Brite
KEGG Orthology (KO) [BR:
caln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
caln03016
]
NIES2098_47960
Enzymes [BR:
caln01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NIES2098_47960
Transfer RNA biogenesis [BR:
caln03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NIES2098_47960
Prokaryotic type
tRNA splicing ligases
NIES2098_47960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAY11611
LinkDB
All DBs
Position
5745058..5746503
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AA seq
481 aa
AA seq
DB search
MFNKRDFRRIEDYLWEIPTSYNPKMKVPVWIFADAQILEDALADLSIQQAVNVAMLPGLV
GHVVVMPDVHQGYGMPIGGVMAAKVPGGIISPGAIGYDINCGVRVLASSIEYKNAKSKLS
DLATSLYRNCPSGVGEKGSVPLTTAELDRVCREGAGWTLAQGYAEPEDLEYTEEFGCLQG
ADPDKVSKRAKERARGQLGTLGAGNHFLEVDVVDKVYDSEAADVMGLQEGCLAVQIHSGS
RGFGHQICTDYVQDFQFSVISYGIDLPDRELVCAPIESPEGQAYLAAMKSAANYAFANRQ
LLASHTRRSFQEIFGRKNSNLRQIYDIAHNMGKIETHEIEGEQVTVCVHRKGATRAFGPG
FSDLPADYRSLGQPVLVPGSMGTQSWILLGTERSDRLSFGSSCHGAGRVMSRAKAKREVR
GDRLRGELEQEGINIRTGSMSGLAEEAPQAYKDVSRVVNVVHNAGIARKVARLKPVAVIK
G
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgtttaataaacgagatttccgtcgaattgaggactatttgtgggaaattcctacttcc
tacaatccaaaaatgaaagttcctgtctggatttttgccgatgcacaaattctagaggat
gctttggcagatttatcaattcaacaggcggttaacgttgccatgttacctggattagtc
ggtcatgtagttgtcatgcccgatgttcatcaaggctatggtatgcctattggtggagtg
atggcagcgaaagtacctggtgggattatctcaccgggggcaattggctatgacatcaac
tgtggtgtccgggttttagcttcatcaattgagtataaaaacgctaagtccaaactgagc
gatttagcaacttctttataccgtaactgtcctagcggtgtgggcgaaaaggggagtgtg
ccattaactaccgcagaattagatcgagtttgtcgtgagggtgcaggttggacgttagct
caaggttacgctgaaccagaagatttagaatatacggaagaatttggttgtttgcaaggt
gcagatccggataaagtaagcaaacgagccaaagaacgagctagaggacagttaggtact
ttgggtgcaggtaatcattttctcgaagtggatgtagtagataaagtttacgactcagaa
gcggctgatgtcatgggcttacaagaaggttgtctggctgtgcagattcatagcggttcg
cgcggttttggacatcaaatttgcacggattacgtccaagattttcaattttcagtcatt
agctatggaattgatttaccagatcgagaattagtttgtgcgccgattgaatctccagaa
ggacaagcttatctagcggcgatgaagtcagctgctaactatgcttttgctaatcgtcag
ttgttagcatcccataccaggcggagttttcaggaaatatttgggagaaaaaactcgaat
ttacgccaaatctatgacattgctcacaatatgggcaaaattgaaactcacgaaattgag
ggcgaacaagtgacagtatgcgttcaccgcaaaggtgcaactagagcctttgggccgggg
ttttccgatctacctgctgactaccgttctttggggcaaccggtgttagttcctggttcg
atgggtacgcaaagctggattttgttgggaactgaaagaagcgatcgcctttcttttggt
tctagttgtcacggtgcggggcgagttatgagtcgagccaaggcgaagcgagaagtaaga
ggcgatcgcttgcgtggcgaacttgaacaagaaggaatcaatatccgcacaggttctatg
tctggtttagcagaggaagcaccacaagcttacaaagatgttagtcgggttgtgaatgtt
gtccacaacgctgggattgctcgtaaggtggctcgtttgaaaccggttgctgtaatcaaa
ggatga
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