Calothrix sp. NIES-2098: NIES2098_49290
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Entry
NIES2098_49290 CDS
T08374
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
KO
K03090
RNA polymerase sigma-B factor
Organism
caln
Calothrix sp. NIES-2098
Brite
KEGG Orthology (KO) [BR:
caln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caln03021
]
NIES2098_49290
Transcription machinery [BR:
caln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NIES2098_49290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
Sigma70_r4
HTH_23
Sigma70_ECF
HTH_3
TnsD
HTH_Crp_2
HTH_24
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
BAY11744
LinkDB
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Position
complement(5903194..5903979)
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AA seq
261 aa
AA seq
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MAASESSVRIDGIELLHLYHQNPSIKLRNQLVQLHTGLVRKMAHKFSHQCNEPYEDLEQI
GYFGLIRAIERFDPSQGYAFSSFAVPYIRGEMLHFLRDRSTLLKIPRRWQELYNEGQKVR
KELAIALGRPPKDSEIAKQLQVSVQEWQETKLAAQNRMPLSLDATAVHYVDCQITLGEAL
PCPRSSALQQQEEERQQLQGAISLLEEKPRMAVELVFLKELSRKDAAKNIGTSPMTVTRY
LQKGIQDLICYLQPQAVATGS
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaagtgagtcctctgtgcgaatagatggtatagagttattgcacttataccac
cagaatccttctattaaactgcgtaatcaacttgtacagctacatactggcttagtacgg
aagatggctcataaatttagccatcaatgtaatgaaccttatgaagatttagaacaaatt
ggttattttggtttaattagggcaattgagcgcttcgatcccagccaaggatatgcgttt
agttcctttgctgtaccatatattcgtggtgagatgctgcattttctgcgcgatcgcagt
actctattaaaaattcctcgccgttggcaagaactatataatgaggggcaaaaggttcgc
aaagaattagcaattgctttgggtcgtcctccgaaagattcggaaattgctaaacagctt
caggtatctgtacaagaatggcaagaaactaaattagctgcacaaaaccggatgccttta
agtttagatgctaccgcagttcactatgttgattgccaaataactttgggtgaagccctt
ccttgtcctcgttctagtgcgcttcagcaacaagaagaagaacgtcaacaactccaaggt
gcaatcagtttattagaagaaaaaccccggatggcagttgaattagtatttttaaaagaa
ctttcacgtaaagatgctgctaaaaatattggcactagtcccatgactgtaacgcgatat
ctgcaaaagggaattcaagatctaatttgctatttgcaaccacaggctgtagcaacaggg
tcatag
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