Calothrix sp. NIES-2098: NIES2098_58720
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Entry
NIES2098_58720 CDS
T08374
Name
(GenBank) beta-lactamase domain-containing protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
caln
Calothrix sp. NIES-2098
Pathway
caln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES2098_58720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caln03019
]
NIES2098_58720
Messenger RNA biogenesis [BR:
caln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NIES2098_58720
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
BAY12683
LinkDB
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Position
complement(7060504..7062276)
Genome browser
AA seq
590 aa
AA seq
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MAKNEANSALKIIPLGGLHEIGKNTCVFEYEDEIVLLDAGLAFPTEAMHGVNIVLPDMTY
LRENRHKIKGMIVTHGHEDHIGGIAFHLKQFEIPVIYGPRLAMAMLEGKLEEAGVRDRTE
LRSVLPRDVVRIGKSFFVEYIRNTHSIADSFTVAIHTPIGIVIHTGDFKIDHTPVDGERF
DLQRLAEHGEKGVLCLLSDSTNSEVPGFTPSERSVYPNLDRIFSQATGRLFVTTFASSVH
RINMILDLAQKHNRTVTVVGRSMLNLIAHARNLGYIKCPDHLLQPLHTIRSLPDENVLIL
TTGSQGEPMSAMTRIANKEHPHIKIRQGDTVVFSANPIPGNTIAVVNTIDKLMLQGANVI
YGRDKGIHVSGHGCQEDQKLMIALTRPKFFVPFHGEHRMLVKHAQTAQSMGIQPENMIVI
QNGDIVELTEDAICVAGKVPSGIELVDTTSSGMVSAKVLQERQRMASEGIVTIAAAIDWS
GKLLAKPEIHLRGVVTSIERSLLQKWVQQRIEEILSVRWSEFAQPSEGEQSEVDWGGLQG
TLERELQRSIRRELQCQPTVTLLMQIPDEPPVKVSDGRRRRTRTAAQVAS
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaaacgaagctaactccgccctgaaaattattcctttgggcggtttacatgaa
attggtaaaaatacttgtgttttcgagtatgaggatgaaattgttttattagatgcaggt
ttagcctttcctacagaggcaatgcatggtgtaaatattgtcctgccagatatgacctat
ctgcgggaaaaccgccataaaattaaaggaatgattgtcacccacggtcatgaagaccat
atcggcggcattgcatttcacctcaagcaatttgaaatacccgtaatttacggcccgaga
ctagcgatggcgatgctagagggtaaattagaagaagcaggagtacgcgatcgcacagaa
ttaagatcggttctcccccgcgatgtagtcagaattggcaaatcattctttgttgaatac
attcgcaacacccactccatcgccgatagctttaccgttgcaattcatacacccataggt
atagttattcatacaggagattttaaaattgaccacaccccagtcgatggcgaaagattt
gacttacaacggctagcagaacatggtgaaaaaggcgtgctttgtttgttgagtgattca
accaactcagaagtaccaggattcaccccttcggaacgttccgtttaccctaatcttgac
agaattttctctcaagccaccgggagattatttgtcactacttttgcttccagcgttcat
cgcatcaacatgattttggatctggcgcagaagcacaaccgcacagtgacagttgtcggg
cgttcgatgctaaatttgattgctcatgcacgcaatctaggttatatcaagtgtcccgat
catctcctgcaaccgttgcatactattcgcagtttgccagatgagaatgtgctgattctc
actacaggttctcaaggcgaaccaatgtcagccatgactcggattgccaataaagaacac
ccccacattaaaattcgtcaaggtgatacggtagtcttctctgctaacccgattcctggt
aatacgatcgcagtcgttaatactatagataaattgatgctccaaggagcaaatgtaatc
tatggtcgagacaaaggaattcacgtttctggtcacggttgtcaagaagaccaaaaactg
atgattgccttaactcgaccaaagttttttgtacccttccacggcgaacatcgaatgctg
gtgaagcacgcccaaacagcgcagagtatgggtattcaaccagaaaatatgattgtgatc
cagaatggcgatattgtggaattaacagaagatgccatctgcgttgctggaaaagtacca
tctgggattgaactggtggatactactagttctgggatggtcagtgccaaagtattgcaa
gaacggcaaagaatggcttctgaaggcattgtcaccatcgccgcagccatcgattggagt
gggaaattattagccaagccagaaattcacctgcggggtgtagtgaccagtatagagcga
tcgctcctacaaaaatgggtacaacagcgaattgaagaaatattgagcgttcgttggtca
gaatttgctcaacccagcgaaggcgagcaatcagaagtagattggggtggattgcaaggg
accttagagcgagaattgcaacgttccatccgtcgggaactgcaatgtcaacctactgtg
acattgttgatgcagattcctgatgaaccacctgtaaaagtcagcgatggtagaagacgg
cggacgagaactgctgctcaggtagcatcgtaa
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