Calothrix sp. NIES-2098: NIES2098_61430
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Entry
NIES2098_61430 CDS
T08374
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
caln
Calothrix sp. NIES-2098
Pathway
caln03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
caln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NIES2098_61430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caln03400
]
NIES2098_61430
Enzymes [BR:
caln01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
NIES2098_61430
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
NIES2098_61430
DNA repair and recombination proteins [BR:
caln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NIES2098_61430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
BAY12952
LinkDB
All DBs
Position
complement(7366169..7367011)
Genome browser
AA seq
280 aa
AA seq
DB search
MPELPEVETVRRGLNQLTLNQEITGGDVLLDRTIAYPFSVGEFIHGIKGSAIATWYRRGK
YLLAELSPSPTAGYLGVHLRMTGQLLWLHKDEPLHKHTRVRLFFGEQQELRFVDQRTFGQ
MWWVPSNVAVESVITGLAKLAVDPFSPEFTVEYLAQKLQNRRRPIKTALLDQSVVAGLGN
IYADEALFKSGILPETLCTDLQREQIKLLRSAIIQVLEASIEVGGTTFSNFLNVKGINGN
YGGVALVYNRAGEPCRVCGNLIQRTRLAGRSSHFCPECQH
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactgcctgaagttgaaacagtccgcaggggtctcaatcagttgaccctaaat
caagaaattacgggtggagatgttttgctcgatcgcaccatcgcctacccgttttctgtt
ggcgaatttattcatggaattaaaggaagcgcgatcgccacttggtatcgtcgtggtaag
tatctcctagctgaattatctccctctcccaccgctggctatttgggagtgcatctacga
atgacaggtcaactcttgtggctgcataaagacgaaccactacacaaacacacgcgggtc
agattattctttggggagcaacaggaattgcgcttcgtcgatcagcgtacatttggtcaa
atgtggtgggttccctcaaatgttgctgtcgaaagtgtcatcactggtttggcaaaactc
gcagtcgatccgttttcaccagaatttacagttgagtatttagcgcaaaagctacaaaat
cgtcgccgtccgatcaagactgctttactagatcaatcagtcgtggcaggattgggtaat
atttatgctgatgaagcactttttaagagtggaatattaccagaaaccctatgtacagat
ttgcagcgagagcaaatcaagcttttacggtctgccatcattcaagtattagaagccagt
attgaggttggtggtacaacttttagtaatttcctcaatgtaaaaggtattaatggtaac
tatggtggtgtagcattagtatacaatcgtgcaggtgaaccctgccgagtttgtggtaat
ttgatacaacgtactaggttagcggggcgttcgagtcacttttgccctgaatgtcaacat
tag
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