Calothrix sp. NIES-2098: NIES2098_64100
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Entry
NIES2098_64100 CDS
T08374
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
caln
Calothrix sp. NIES-2098
Pathway
caln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES2098_64100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caln03019
]
NIES2098_64100
03016 Transfer RNA biogenesis [BR:
caln03016
]
NIES2098_64100
Enzymes [BR:
caln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
NIES2098_64100
Messenger RNA biogenesis [BR:
caln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NIES2098_64100
Transfer RNA biogenesis [BR:
caln03016
]
Prokaryotic type
tRNA degradation factors
NIES2098_64100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
KH_KhpA-B
KH_2
KH_NusA_1st
KH_SLS1_2
aRib
Motif
Other DBs
NCBI-ProteinID:
BAY13215
LinkDB
All DBs
Position
complement(7670284..7672440)
Genome browser
AA seq
718 aa
AA seq
DB search
MTEVDKSISFDGRDIRLKVGLLAPQAGGSVLIQSGDTAVLVTATRSQAREGIDFLPLTVD
YEERLYAAGRIPGGIMRREGRPPEKTILTSRLIDRPLRPLFPSWLRDDLQIVALTLSMDE
QVPPDVLAVTGASIATLIAQIPFNGPMAAVRVGLVGDDFVINPTYAEIEAGDLDLVVAGS
PDGVIMVEAGANQLPERDIIEAIDFGYEAVRDLIQAQLDLVQELGLEIVHREPPEVDPTL
DQFISDRASEEIKKILAQFELTKPERDAALDVVKESIANAIAELPEEDPIRVATTANSKA
LGNTFKEITKHFMRRQIIEDNVRVDGRKLDEVRPVSCLVDVLPKRVHGSGLFNRGLTQVL
SACTLGTPGDAQNLSDDLQVDQSKRYLHHYNFPPFSVGETKPMRAPGRREIGHGALAERA
LLPVLPPKEQFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIIKPVSGAAMGLIK
EGDEVRVLTDIQGIEDFLGDMDFKVAGTDAGITALQMDMKISGLSLDIIAQAIHQAKSAR
LHILDKMLQTIEQPRTETSPYAPRLLTIKIDPDMIGLVIGPGGKTIKGITEETGAKIDIE
DDGTVTISAVDESKAKRARNIIQGMTRKLHEGDVYVGRVTRIIPIGAFVEFLPGKEGMIH
ISQLADYRVGKVEDEVAVGDEVIVKVREIDNKGRINLTRLGIHPDQAAAAREAAAVNR
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgacagaagttgataagtcaatatcctttgacggacgggatattcgactgaaggtaggc
ctgctagcaccccaagctggtgggtcggttttgatacaatcaggggatacagctgtttta
gtgacggctacgcgatcgcaagccagagaaggcattgattttcttcccctcacagtagat
tacgaagaaagactatatgctgcgggtaggattcccggcgggatcatgcggcgtgaaggt
cgtccaccagaaaaaacaattcttactagccgtctgatagaccgtcccctgcgtccgctg
ttcccttcatggttgcgggatgacttgcaaattgtcgctttgacattgtcaatggatgag
caagtaccacccgatgtgctcgctgttacaggtgcttctattgctactctaattgctcaa
attccctttaacgggccaatggcagccgtcagagtaggtttggtaggcgatgatttcgtt
attaaccctacctacgcagaaattgaagcgggagatttggatctggtggttgcaggttcg
ccagatggtgtgatcatggtagaggcgggagccaatcagttaccagaacgcgatattatc
gaggcgattgattttggctacgaagctgtccgagatttaatccaggcgcaactagattta
gttcaagaactcggtctagaaattgtccaccgagaaccgccagaagtcgacccaacttta
gaccaatttattagcgatcgcgccagtgaagagattaagaaaattctcgcgcaatttgaa
ttaacaaagccagagcgcgatgccgctttggatgtagttaaggaaagtatagcaaatgcg
atcgcggaacttcctgaagaagatcccattcgtgttgcgacaaccgctaacagcaaagcc
cttggtaacactttcaaggaaattaccaaacacttcatgcgccgtcaaattatcgaagac
aacgttcgcgttgatggtcgcaaactcgatgaagtgcgtcccgtttcttgtttagttgat
gtcttacctaagcgcgttcacggtagtggcttatttaaccggggactcactcaggtatta
tctgcttgtaccctaggtacacctggagatgctcaaaacctcagcgatgacctgcaagta
gaccaatctaaacgctacttacaccattacaacttcccacccttctcagtcggggaaact
aagccgatgcgcgccccaggaaggcgggaaattggtcatggcgcattagcagagcgagcg
ctgttacccgtgctaccaccgaaagaacaatttccttacgtaattcgcgtagtatcggaa
gtcctatcttccaatggttctacctcgatgggttcggtgtgcggttccaccctagcgtta
atggatgctggcgtaccaattattaaacctgttagcggtgcagcaatgggtctgattaaa
gaaggagatgaagtccgcgttcttactgatattcagggtatcgaagactttttaggcgac
atggactttaaagtggctggtacggatgcggggattacagccttacaaatggatatgaag
atctctggtctgtcattggacattattgcccaagccatccatcaagccaagtcagcccgc
ttgcacattttagacaaaatgctgcaaaccatcgagcaaccacgcacagaaacttcaccc
tacgctccacgtctgttgaccattaagatcgatcccgacatgattggtctggtgattggg
cctggaggtaagacaatcaaaggcatcaccgaggaaacaggtgcaaaaattgacattgaa
gatgatggcaccgttacaatttccgcggtggatgaaagcaaggcgaagagagccagaaat
atcatccaaggtatgacccgcaagctgcacgaaggtgacgtttatgtaggacgcgtgact
cgcattatacctattggtgcctttgtagaatttttacccggaaaagaaggcatgatccac
atttctcaactagctgactaccgcgttggtaaagttgaagatgaagtagccgttggcgat
gaagtgattgtcaaagtgcgcgaaattgacaacaaaggtcggattaatctcacacgttta
ggtattcatcctgaccaagcagctgcggcacgagaagcagcagcagtaaatcgataa
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