Calothrix sp. NIES-2098: NIES2098_70370
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Entry
NIES2098_70370 CDS
T08374
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
caln
Calothrix sp. NIES-2098
Pathway
caln03420
Nucleotide excision repair
caln03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
caln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NIES2098_70370
03430 Mismatch repair
NIES2098_70370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caln03400
]
NIES2098_70370
Enzymes [BR:
caln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NIES2098_70370
DNA repair and recombination proteins [BR:
caln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NIES2098_70370
MMR (mismatch excision repair)
Other MMR factors
NIES2098_70370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
AAA_30
SinI
DEAD
Motif
Other DBs
NCBI-ProteinID:
BAY13840
LinkDB
All DBs
Position
complement(8443618..8446068)
Genome browser
AA seq
816 aa
AA seq
DB search
MSDTNFIEQVTQESLFSELSDKSPVSTLREEAIARIRNSLRPGQQQMADWYAGPLAVSAV
PGAGKSTGMAAAAAIAIARQYERAAQSRLSSRRQLVVVTFTRSAAANIKAKIRKYLREDL
SLPQTGFAVYTLHGLALNIASRHPDLSGLQLENVTLITPNQSHRFIRTAVEQWIANNQTT
YLRLLEGSQFDGEETERLRRQSVLRTEVLPDLATTVIHEAKSSGLSPEDLRQWNEQTTDP
YAILSVAAGLYEQYQKLMRSRDFIDYDDMILAALRVLENDSARRLEQNQVFAVFEDEAQD
SSPLQTRLLEILASDMGDKGDKEDKGDNFLLLTPHSGLNLVRVGDPNQAINSTFTPADPI
YFRQFCEECDRLRRLATMDRAGRSTRIVIEAANFALEWINSFYGVKLQQSSHGSISSLPF
RDQRICPVDTGDPQQDANPAPVGRGLELYTPRDIHHTVELLSKRAIELFAEDPTKVSAAV
LVRENRQGRWLAEALEPICKEHKITLYDVGERDRRSHIPQEILALLQFCDRPHSPDYLKA
ALEVLVERQLIPTQDLNALASLPEEFLYPGPLAAPQTETVQKAAHLCRSLLRARLELPIY
QLISFLALALNYDQAELATADKLAERVNQQIAGNSSMGAMLSALSEIVSSERFEAVETED
LEARYTRNGQLTIITMHKAKGLDWDYVFLPFLHENLIPGRFWVPPQSQFLGDFTLSEVAR
AQVRAALHNESRIPEVSQAWEIAKHLKTAEEYRLLYVAMTRAKRLLWMSAAQKAPFTWSK
PENLQEQAPCPVFPALKRQFPDCVVSGATEVNRNLD
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacactaattttattgagcaagtgacgcaagaatctctattctcagaattatct
gataaatcacctgtttctactctgcgggaagaagcgatcgcccgcattcgtaatagcctg
cgccccggacagcagcaaatggctgattggtatgctggccctttggctgtttctgccgta
cctggtgctggtaaatctacgggaatggcagctgcggcggcgatcgcgatcgcgcgtcag
tatgaacgtgcagctcaatcgcgcctctcttctcgccgtcagttggtagttgttaccttt
acacgttctgctgctgccaatattaaagctaaaatccgcaaatatttacgcgaggattta
tctttaccccagacaggttttgctgtttacactttgcacggtttggcattgaatattgcc
agccgtcatcccgatttatctgggttgcagttagaaaatgttacattaattacaccaaat
caaagccatcgtttcattcgtaccgccgtagaacagtggattgctaataatcaaactact
tatttacgtttattagaaggtagccaatttgacggtgaagaaacagaaagattacgccgt
caatcagtgttgcgcacagaagtcttaccagacttagcaactactgttattcatgaagcc
aaaagttctggactatcacccgaagatttacggcagtggaatgaacaaaccacagatccg
tacgcaattttaagcgtagccgcaggcttgtacgagcaatatcaaaaattaatgcgatcg
cgcgacttcatcgactacgacgacatgattttagcagcgttgcgagtgctagagaacgac
agcgctcgccgccttgagcaaaaccaagttttcgcagtctttgaagacgaagctcaagat
tctagtccattacagacgaggttgctggaaattttggcgagtgatatgggggacaaggga
gacaaggaggataagggggataattttttacttcttactcctcactcaggactgaactta
gtacgagtaggcgaccctaaccaggcgattaactcaacttttaccccagccgatccgatt
tattttcggcaattttgcgaagagtgcgatcgcctgcgaagattggcgacaatggatcga
gctgggcgaagtacaagaattgtcattgaagcagctaattttgcgctggaatggattaat
agtttttacggagtcaagctgcaacaatcatctcatggctctatctcttcacttcccttc
cgtgaccagagaatttgtcctgtagacactggcgacccccaacaagatgctaaccccgca
cccgtaggaagagggctagaactttatacgccccgtgatattcatcacacagtagaatta
ctttccaagagagcgatcgagttatttgctgaagaccccacaaaagtgagtgcagccgtg
ttagtgcgggaaaatcgccaaggaagatggctagctgaagcactagaacctatatgtaaa
gagcataaaattacactttacgatgtgggagaacgcgatcgccgttctcatatcccgcaa
gaaattttagcattactgcaattttgcgatcgcccccattcccctgattacctaaaagct
gcgcttgaggtattggtagaacgccagttaattcccacccaagacctcaatgccttagct
agtttaccagaagagtttttgtatcccggccccttggcagcaccgcaaactgaaacagtc
caaaaagctgcacatctatgtcgtagtttactccgcgctcgcttggaactgcccatatac
cagttaatttcttttttggctttggctttaaattacgaccaagcagaactagcaacagcc
gacaaactcgcagaacgggtaaaccagcaaatagctggtaatagttcaatgggagcaatg
ctgtcagctttgagtgaaatagttagttccgaacgctttgaagctgtagaaacagaagat
ttagaagcgcgttacacccgtaacggtcaactgacaattattaccatgcacaaagccaag
gggctagattgggactatgtttttctcccttttctccacgaaaacttaattcccggtcgg
ttttgggttccaccccaaagccaatttttgggcgactttactctatctgaagttgctcgc
gctcaagtgcgtgctgctttacacaatgaatcgcgcatcccagaagtttctcaagcttgg
gagatagcaaaacatctcaaaactgctgaagagtaccgtttactttacgttgcgatgacg
agagccaagcggttgttgtggatgtctgcggcgcaaaaagcacctttcacgtggagtaaa
ccagagaatttacaagaacaagcaccttgtccagttttccccgccttaaagcgccaattt
cctgattgtgtggtttctggggcgacagaggttaacaggaatttagactag
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integrated database retrieval system
