Calothrix sp. PCC 7507: Cal7507_5263
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Entry
Cal7507_5263 CDS
T02358
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
calo
Calothrix sp. PCC 7507
Pathway
calo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
calo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cal7507_5263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calo03019
]
Cal7507_5263
03009 Ribosome biogenesis [BR:
calo03009
]
Cal7507_5263
Enzymes [BR:
calo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cal7507_5263
Messenger RNA biogenesis [BR:
calo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cal7507_5263
Ribosome biogenesis [BR:
calo03009
]
Prokaryotic type
rRNA helicases
Cal7507_5263
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
Cas3-like_C_2
Sigma70_r4
Motif
Other DBs
NCBI-ProteinID:
AFY35602
UniProt:
K9PSQ7
LinkDB
All DBs
Position
complement(5974712..5976256)
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AA seq
514 aa
AA seq
DB search
MNLSFQELGISQERVEQLERIGFTTPTNIQIQAIPQLLAGRDVVGQSQTGTGKTAAFSLP
ILERLDINQRAVQALVLTPTRELAIQVHDAIDQFIGNDGLRVLAIYGGQSIDRQILQLKR
GVHMVVGTPGRVIDLLDRGCLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPADRQTA
LFSATMPPSIRMIVNKFLRSPATVTVEQPKAAPNKINQVAYLIPRHWTKAKALQPILEME
DPETALIFVRTRRTAAELTNQLQSAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVATD
IAARGLDVDQLSHVINYDLPDSAETYVHRIGRTGRAGKEGTAISLVQPFERRKQQMFERH
NRQTWQVLTIPTRAQIEARHILKLQEMVGQALTGERLASFLPIVSELIEKYDAQAIAAAA
LQIAYDETRPAWLQSDIEIPQEDMSTPKPKLNKRRESPSDRNRANWSKLDSSGALEDERN
GSPKPKLRTTSRRDVSVSPSNQKLGSPTGRESAS
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgaatctttcgtttcaagaactaggcatttcacaggaacgtgttgagcaattagaaaga
attggctttaccacacctaccaatattcaaatccaagcgattccgcaactgttggcggga
cgtgatgtagttggtcaatcccaaaccggcacaggtaagacagcagcattttcactacca
attctcgagcggctggatattaatcaaagagccgtgcaagccttggttttgactccaact
cgtgaactagcaattcaagttcatgacgcgatcgaccaattcatcggcaacgatgggttg
cgggtgttagcaatttatggtggacaatcaattgaccgccaaattttgcaactcaaacgt
ggtgttcacatggttgtgggcactccaggacgggtaattgacttacttgatcggggctgt
ttaaagctagatcaggtgaagtggtttgtgttggatgaagccgatgaaatgttgagcatg
ggctttatcgacgatgtgatcaaaattctgtcccaagcaccagcagatcggcaaacagcg
ctattttcagcgacaatgccgccatcgattcgcatgatcgtcaacaaatttttgcgatcg
ccagcaacagtcactgtggaacagcccaaagctgcacccaacaaaatcaatcaggtagct
tacttgattcctcgtcactggacaaaagccaaagctttacagccaattctggaaatggaa
gatccagaaacagctttaatctttgtccgtactagacgcaccgccgccgaactcaccaat
caactgcaatccgctggacacagtgtggatgaataccacggtgacttgtcacagcaagcg
cgggagcggttattgactcggttccgcaatcgtcaggtgcgctgggtagtagccactgat
attgctgcacggggattagatgtcgatcaactctcacacgtgatcaactacgatttacct
gatagcgcggaaacttacgtccaccgtatcggacggactggtagagctggaaaggaagga
acagcaatttctttggttcagccctttgagcgccgcaagcaacagatgtttgaacgccat
aaccgccaaacttggcaagtgctgacgattcccacacgggcacagattgaagcacgtcac
atcctgaaattgcaagaaatggtaggacaagctttaaccggtgagcgtctggcttcattt
ttaccgatagtcagcgaactcatcgaaaaatatgatgctcaagcgatcgccgcagccgca
ttgcaaatcgcttatgacgaaacccgtcccgcatggctacagtcagacatagagattccc
caagaagacatgtctactcccaagcccaagttaaacaaacggcgtgaatctccaagcgat
cgcaatcgtgccaattggagcaaattagactcttccggtgctcttgaagatgaaagaaac
ggctctcctaagccaaaactgcggacaacaagccgccgtgatgtttctgtttcaccctcc
aatcaaaaactaggctcccccacaggtagggaatcagcttcttag
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