Calothrix sp. PCC 7507: Cal7507_5973
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Entry
Cal7507_5973 CDS
T02358
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
calo
Calothrix sp. PCC 7507
Pathway
calo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
calo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cal7507_5973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calo03019
]
Cal7507_5973
Enzymes [BR:
calo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cal7507_5973
Messenger RNA biogenesis [BR:
calo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cal7507_5973
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HI1480
UvrD-helicase
P-loop_SecA
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
AFY36283
LinkDB
All DBs
Position
complement(6778097..6779413)
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AA seq
438 aa
AA seq
DB search
MSFSNLGLSNEIIRAVTELGYTKPTPIQKQAIPVILSGGDLLAGAQTGTGKTASFTLPLL
HRLSNDSVKSTSNPYPPIRALILTPTRELAAQVESSVREYGKYLNLNTMAMFGGVSINPQ
KRLLKGRVDILVATPGRLLDHVQQGTVNLSHVEVLVLDEADRMLDMGFIRDIRRILSLLP
KQRQNLLFFATFSDKIKALATGLLNHPKMIEVARRNVTADTVAQKVYKVERDRKCQLLAH
LIRKDNWYQVLVFTRTKYGADRLVKQLTQERIQALAIHGNKSQSARTHALAKFKNGSLQV
LVATDIAARGLDISELPHVVNFDLPNVASDYVHRIGRTGRAGASGEAVSLVCVDEYQLLT
EIEKLIEQRLPFEVVAGFSANSHTVPAEPISDERKHKPQGSKPQTRSTAKQSAPQTVIGG
KKSDPRTSSSRRWAKRDR
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttctaatctcggcttgtccaatgaaattatccgtgcagtcaccgagctaggg
tacactaaacccacgccaatccagaaacaggcaatccctgtcatcttgtcaggtggggat
ctgctagctggtgcccaaactgggactgggaagaccgccagtttcaccttgccactcttg
catcggttgtcgaatgacagtgttaaaagcacgtctaatccatacccaccaatccgggcg
ctgattctcactccgactcgtgaactcgctgcacaagtggaatcaagcgtgcgtgaatac
ggcaagtacctgaatttgaacacaatggcgatgttcggcggggtcagtattaatccgcaa
aaacggcttttgaagggtcgggtggatattttggtggctaccccagggcggctgctagac
catgtacagcagggcacggtgaacctgtcacatgtcgaggttttggtgttggatgaagca
gatcggatgttggatatgggttttattcgtgatatccgtcgtattctctcgctcctgccc
aaacagcgacaaaacttattatttttcgctaccttctcggacaaaatcaaggcgctcgcc
actggactgctgaatcacccgaagatgatcgaggtggcacgccgcaacgttactgccgat
actgtggcgcagaaagtctataaagtagaacgtgacaggaagtgccaattacttgctcac
ctgattcggaaagataattggtatcaagtgctagtgttcactcgcactaagtatggtgct
gaccgtttggttaaacagttgacccaggagcggattcaagcactagctattcatggtaat
aagagccagtcggcgcgtacccacgctttggcaaagttcaaaaacggcagtctacaggta
ttagtggccaccgacattgccgcgcgaggtcttgacatcagcgaactacctcatgtggtc
aatttcgatctgcccaatgtcgcatccgattatgttcatcgtatcggtcgcactggtcgc
gctggtgcttcaggtgaagctgtgtcgctggtgtgcgtcgatgaataccagctgttgaca
gaaatcgaaaaactgattgaacagcgcttgccttttgaagtagttgctggctttagtgcc
aattcccacaccgtgcccgctgaaccaatttctgatgaacgcaagcacaaaccccaaggt
agcaagcctcagactcgctctactgctaaacaatcagcaccgcagactgtgataggtggc
aaaaagtctgatccgcgtacctcctcgtcacgccgttgggctaaacgcgatcgctga
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