Calothrix sp. NIES-3974: NIES3974_20030
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Entry
NIES3974_20030 CDS
T09641
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cals
Calothrix sp. NIES-3974
Pathway
cals03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cals00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES3974_20030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cals03019
]
NIES3974_20030
03009 Ribosome biogenesis [BR:
cals03009
]
NIES3974_20030
Enzymes [BR:
cals01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NIES3974_20030
Messenger RNA biogenesis [BR:
cals03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIES3974_20030
Ribosome biogenesis [BR:
cals03009
]
Prokaryotic type
rRNA helicases
NIES3974_20030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BAZ05356
UniProt:
A0A1Z4NI15
LinkDB
All DBs
Position
complement(2472319..2473863)
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AA seq
514 aa
AA seq
DB search
MNPSFLELGLSEERVRHLEEIGFTTPTNIQAQAIPQLLAGRDVVGQSQTGTGKTAAFSLP
MLERIDVKNRVVQALVLAPTRELAMQVHDSMTNFIGKQGLRVLAIYGGQSIERQMMQLKR
GVHIVVGTPGRVIDLLERGSLNLDNVRWFVLDEADEMLSMGFIDDVERILSQAPAERQTA
LFSATMPPSIRQLVNNFLRDPVTVTVQQPKAAPTKINQVAYVVPRHWTKARALQPILEME
DPESALIFVRTRRTAAELTNQLQSAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVATD
IAARGLDVDQLSHVINFDLPDSPETYVHRIGRTGRAGKEGTAISLVQPFERRKQQAFERH
VRQAWQVLPIPTRAQIEAQYLLKLQAQVRETLTGERLASFLPIVRELSEEYDAQAIAAAA
LQMAYDQTRPSWLQAEEIPEENFVPPAPRKGGRGGRREYERDRPSSSSRRGSNWEGERRS
SGTPKPKLRTNRYEGSPEPAKKLGSASGAKESAS
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgaatccttcatttctcgaactaggactctcagaagaacgggttaggcatttagaagaa
attggttttacgacaccgacaaatattcaagcccaagcgattccccaactgttagcggga
cgggatgtggtgggacaatcccaaactggtacagggaaaacagcagcattttccctaccg
atgttagaacggattgatgtcaaaaatcgagtagtgcaggcattggtgttggctccgacc
cgggaattggccatgcaagtccatgattccatgaccaattttattggcaaacagggattg
cgagtgttagcgatttatggtggacagtcgattgagcgacaaatgatgcagctcaagcgg
ggtgtacatattgtggtcgggacaccgggacgggtaattgatttgctcgaacgcggtagt
ttgaatctagacaatgtgcgttggtttgtgttagatgaagccgatgaaatgttgagcatg
ggctttatcgatgacgtggaaagaatcctctcccaagctcccgcagaaagacaaaccgcg
ctattttcggcaactatgcccccatcaattcgccaattggtgaataactttttacgtgat
ccagtcacggtgactgtgcaacaaccgaaagctgcaccgactaaaattaaccaagttgcc
tatgtggttccccgtcattggacaaaggctcgtgctttgcaacccattttagaaatggaa
gacccggagtcggcattaattttcgtgcgtacccgcagaaccgccgccgaattaaccaac
caattacagtctgccgggcatagtgtcgatgaataccacggcgacctatcccagcaagca
cgggaaaggttgttgacccgttttcgcaatcgtcaagtgcgttgggtggtagcaacggat
attgcggctcgtggtttggacgtggatcaattatcccacgtaattaactttgatttaccc
gatagtccggaaacatacgtacaccggattggtcggacgggtcgagcagggaaagaagga
acagccatttccttggtgcaacccttcgagcgcagaaaacagcaagcctttgaacgtcac
gtgcgacaagcatggcaagttttaccgattcccacccgcgctcaaattgaagcccagtat
ctgctaaaattacaggcacaggtacgggaaaccttgactggggaaagattagcatccttt
ttacccattgtccgggaattgagtgaagaatacgacgcacaggcgatcgcagctgcggct
ttacaaatggcctacgaccaaacccgtccttcctggttacaagccgaagaaattcccgaa
gaaaactttgttccccccgcacccagaaaaggtggtcgaggtggacgaagggaatatgag
cgcgatcgcccttcctcttcttcccgtcgtggtagtaattgggaaggggaacgtcgtagt
agtggtactcctaagcccaaactacggaccaaccgctatgaaggttcccctgaaccggcg
aaaaaattaggttctgccagtggtgcgaaggaatcggcttcttaa
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