Calothrix sp. NIES-3974: NIES3974_30250
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Entry
NIES3974_30250 CDS
T09641
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
cals
Calothrix sp. NIES-3974
Brite
KEGG Orthology (KO) [BR:
cals00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cals03021
]
NIES3974_30250
Transcription machinery [BR:
cals03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NIES3974_30250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
Sigma70_r3
HTH_Crp_2
HTH_3
Sigma70_ECF
HTH_24
HTH_23
HTH_17
KORA
MarR_2
HTH_31
HTH_11
Xre-like-HTH
HTH_Tnp_4
HTH_Tnp_ISL3
HTH_8
SpoIIID
LacI
DUF3670
GerE
Motif
Other DBs
NCBI-ProteinID:
BAZ06364
LinkDB
All DBs
Position
complement(3671461..3672231)
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AA seq
256 aa
AA seq
DB search
MPTIATNELKHEIWQLLREYQSTQSPDIRNQLVQLNFGLVRKEAHYWMNQCQESYEDLLQ
VGCLGLIRAIERFEISKGHAFSSFAIPYIRGEIQHYLRDKGVTVRIPRRWLAIQQQAIGV
SRSLREQYNRQPSDAELAAALGVSVEEWQQIRLAWINRAPLSLDVPIDDDDGAACLGELV
PDHRYRSFQLAQEDRIRLQQALLQLENRTREVVEFVFLHDLTQKQVAERLGISVVTVSRQ
VKKGLGLLKQLMGGYE
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atgcctaccatcgccaccaatgaattaaaacacgaaatttggcaattattgcgcgagtac
caatctactcaatcccctgatattcgtaaccagttagttcaattaaatttcggtctagtc
cgaaaggaagcgcactactggatgaatcaatgccaagaaagctatgaagatttacttcaa
gttggctgtttggggctgattcgagcgattgaacgctttgaaattagtaagggacatgcc
tttagttcctttgcaattccctatattcgcggtgaaattcagcattacctacgtgataaa
ggagtaactgttcgcattcctcggcgttggttggcaattcagcaacaagctattggtgtt
tcccgttccctacgcgaacaatacaatcgtcaaccgagtgatgctgaacttgctgcggct
ttaggtgtatctgttgaagagtggcaacaaattcgcttggcttggattaatcgtgcgccg
ttaagtttagatgtacctattgatgatgatgatggtgctgcttgtttaggagaactagtt
cctgaccaccgttaccgtagttttcaacttgctcaagaagaccgaattcgtctacaacag
gctttacttcagctggaaaatcgcactcgtgaagttgttgaatttgtatttctccatgat
ttgacccaaaagcaagtggctgaaagactgggtatcagtgttgtcaccgtatctcgacag
gtgaagaaaggtttaggactgttgaagcaactaatgggtggctacgaataa
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integrated database retrieval system
