Calothrix sp. NIES-3974: NIES3974_34180
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Entry
NIES3974_34180 CDS
T09641
Name
(GenBank) ribonuclease E and G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cals
Calothrix sp. NIES-3974
Pathway
cals03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cals00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES3974_34180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cals03019
]
NIES3974_34180
03009 Ribosome biogenesis [BR:
cals03009
]
NIES3974_34180
Enzymes [BR:
cals01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NIES3974_34180
Messenger RNA biogenesis [BR:
cals03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NIES3974_34180
Ribosome biogenesis [BR:
cals03009
]
Prokaryotic type
rRNA processing factors
NIES3974_34180
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
zf-CCHC
Motif
Other DBs
NCBI-ProteinID:
BAZ06756
UniProt:
A0A1Z4NM26
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All DBs
Position
complement(4142899..4144974)
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AA seq
691 aa
AA seq
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MPKQIIIAEQHQIAAVFSEDQIQELVVATGHHQIGDIYLGVVENVLPGIDAAFVNIGDPE
RNGFIHVTDLGPLRLKRSAAAITELLTPQQKVLVQVMKEPTGTKGPRLTGNVTLPGRYVV
LMPYGRGVNLSRRIRNENERNRLRALAILIKPAGMGLLVRTEAEGKPEEAIIEDLENLQR
QWESIQEQAQSSRAPALLNRDDDFIQRVLRDMYGADVNRIVVDSSTGLKRVKQYLQNWSG
GQTPQGLLIDHHRDRTAILEYFRVNAAIKEALKPRVDLPSGGYIIIQPTEALTVIDVNSG
SFTRSATARETVLWTNCEAATEIARQLRLRNIAGVIVVDFIDMESRRDQLHVLEHFNKAL
RADKARPQIAQLTELGLVELTRKRQGQNIYELFGQTCTTCGGLGHVVRLPGETEARIAVT
PMEIPERFVPMPSRSMPSLRQNDNRDSYEMANEGFDSDVDYGSLNLIHHPSYQELGDNSK
RRVRRRQRPNGGNGKEETRIIPGTAAFVSEPDLDLETDNDLERMPELPTPNIGKVGWGER
AELIKPKLDPVKPIVEPPEIVTVEMSPLEQEVYAYAGVSPALHTNRELKNPKSVIYNIVS
PGESKGDKANIPSEIPLPIPRSVPTRKVEIKDEPEDLPSPPPVAEEEVVKVPEPILRGEE
PEEEEGMATPAPTPRNRRTRKRSSAARVEQE
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacaaattattattgccgaacagcatcaaatcgctgcggttttttccgaagac
cagattcaagaattagttgttgccaccggacaccatcaaattggtgatatttacctcgga
gtggtcgagaatgttttaccggggatagatgcggcttttgtcaacatcggcgacccggaa
cgaaatggattcatccatgtaacagatttaggacctttgaggctaaaacgttcagctgcg
gccattaccgaattgttgacaccgcaacaaaaggtattagtccaggtgatgaaggagccg
acggggactaaagggccaagattaactggaaacgtcacccttccaggtcgatacgttgtg
ttaatgccctatggacggggggtaaatctatcccgtcgtatccggaatgaaaacgagcgt
aatcgcttgcgcgccttagctatcctaattaagcccgcaggaatgggattattggtgcgg
acggaagccgaaggtaaaccagaagaggcgattattgaggatttagagaacctgcaacgt
cagtgggaatcaatccaggaacaagcccaatctagtcgcgcacctgccttgctgaatcgg
gacgatgattttattcaacgggtgctgcgggatatgtacggtgcggacgtgaatcgaata
gtggtcgattccagcactggtttaaaacgggtcaaacaatacctgcaaaattggagcggt
ggacaaacaccccagggactgctgatcgatcatcaccgcgatcgcacagctattttggaa
tatttccgggtaaatgcggcaattaaggaagcactgaaaccccgtgttgatttgccttcc
gggggttacataattatccagcccaccgaagcactaacagtgatagatgtcaactccggt
tcctttacccgttcagccacagcgcgagaaacggttttgtggacgaattgcgaagccgcg
acagaaattgctcgtcaattgcgtttgcggaatattgctggggtgatagtcgtcgatttt
atcgacatggaatcccgtcgtgaccaactgcacgttttagaacactttaataaggctttg
cgagcagataaagcccgtccccaaatagcccagttaacggaacttggtttagtggaatta
acccggaaacgccaaggtcaaaatatctacgaactatttggtcaaacctgtaccacctgc
ggagggttaggtcatgtagtccgcttaccaggggaaacggaagcgcggattgccgtcacc
ccgatggaaataccggagcgatttgtaccgatgccatcccgctcgatgcctagtctacgt
caaaacgacaaccgcgacagctatgaaatggccaatgaaggttttgatagcgatgttgat
tatggctccttgaatttaatccaccatcctagttaccaggaattaggagataattccaaa
cgtcgggttcgtcgtcgtcaacgtcctaacggtggtaatggcaaagaagagacccgtatt
attcctggtacggctgcttttgtctccgaaccagacctggatttagagacagataacgac
ctggaaagaatgccagaattgcctactcctaacattggcaaagtcggttggggagagcgt
gcagagctgattaaacccaagttagatccagttaaacccatcgtcgaaccaccggaaatt
gtcacggtggaaatgtcacccctcgaacaggaagtttatgcctatgcgggggtttctcca
gctttgcatacgaaccgtgagttgaaaaatcccaaatcggtgatttacaatatcgtctca
ccaggagaaagcaagggtgataaagccaatatcccaagcgaaattcccttacccataccc
cgttcggttcccactcggaaagtggaaatcaaagatgaaccggaagatttaccttcccct
cctccagtagctgaggaggaagtggtcaaagttcctgagccaatattgaggggtgaggaa
cctgaagaagaagaaggaatggccacacctgctccaactcctcgcaatcgccgtacccgt
aagcgttcttctgctgctcgtgtggagcaagaatga
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