Calothrix sp. NIES-3974: NIES3974_41110
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Entry
NIES3974_41110 CDS
T09641
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cals
Calothrix sp. NIES-3974
Pathway
cals03410
Base excision repair
cals03430
Mismatch repair
cals03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cals00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NIES3974_41110
03430 Mismatch repair
NIES3974_41110
03440 Homologous recombination
NIES3974_41110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cals03400
]
NIES3974_41110
DNA repair and recombination proteins [BR:
cals03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NIES3974_41110
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NIES3974_41110
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NIES3974_41110
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
HTH_11
Motif
Other DBs
NCBI-ProteinID:
BAZ07448
LinkDB
All DBs
Position
complement(5013721..5016114)
Genome browser
AA seq
797 aa
AA seq
DB search
MPEQPQQWILPSPVEVPQEFIKQVSKHLTHSPGIFAAQLLWQRGIRTAEELEKFVDPQVY
PVTSAEEFGEEMDLAVRRLQIARDNREKVMIWGDFDADGVTSTAVLWDGLGQFFTKNIDL
DYYIPNRFTESHGLNCAGIEKISQGGYSLIVTCDTGSTNIEEIIYAKSLGIDVIVTDHHT
LLSDKQSLMPKAYRPPVTAIINPRYLPLEHPLYHLSGVAVAYKLVEALYASLPEVPRQPL
SDLLDLVAVGLIADLVQLSGDCRYLAQMGIRRLQTDFQQPAAQRRRPGIGKLLELCQRSG
DRPTDVSFGLGPRINAVSRIHGDARFCVELLTTRDMNRVNELAEAAELANSRRKSLQKEI
VHQVGQKLTQVDLSTTSVIVLEDPQWNPGVLGLVAGQVAQETGRPTILLSSDIPEETTQA
SQLVLARGSARSINGVDLYQLVKDQSHLLHRFGGHPFAAGLSLPVENLPLFREAINQRLR
QTVDVNTLVPTVTADIVVTVGDLGKELFAELKLLEPCGMGNPVPKLMIKNCWFTKTRHRN
QEDSKGKKIQYIKTEFEICDQSSSNSFPGVWWGHYKDELPTGKADCIVELDFNPSKNRYE
IRLIAVRPAQEHRDYFHQQLDFIIDQRQGMGGTEKRGITSSNNTLIIEKCPTSWDDLQAW
LRRAQYQRQQLILAWSKPPSRPYSETWKILVGIAKYLSRTQQPVTRNQLLEKLQISDQTL
FIGLRALKHLGFKLTRHDTTSSGKTRILFSLTEKPNLSQAKIAVQAFFAALQEEQFQQHY
FSQVPLATIQSMARRIQ
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgccagaacaaccacaacagtggattctcccatctccagtcgaagttccccaggaattt
attaagcaggttagcaaacacctaactcattctccaggaatatttgcagctcaattattg
tggcaaagggggattcgcactgctgaggaattagaaaaatttgtcgatcctcaagtttat
ccagttacgagtgcagaggaatttggggaggagatggatttggcggtacgtcgtttgcaa
atcgccagggataaccgggaaaaggtgatgatttggggtgattttgacgcggatggggtg
acatccacggcagtattgtgggatgggttagggcagtttttcaccaagaatattgattta
gattactacattcccaatcgctttaccgaatcccacggtttaaattgtgcagggattgaa
aaaatcagccaagggggttatagcctcatcgttacctgtgatactggtagcaccaacatt
gaggaaattatttacgctaaatccttgggtatagatgtgattgtcacagaccatcatacc
ttactgagcgataagcagagcttaatgccgaaggcatatcgcccacctgtgacagctatt
atcaatccccgttatttacccttggagcatcctttgtaccatttatcgggggttgcagta
gcctataagttggtggaggctttatacgcaagtttaccagaggttcctcgccaaccctta
tcagatttactggatttagttgccgttggtttgattgccgatttagtccaactgagcgga
gattgtcgctatttagcccaaatgggaatccgacgcttgcaaacggactttcaacaacca
gcagcgcaacgacgtagaccgggaattggcaagttactagaattatgccagagaagtggc
gatcgccctaccgatgtatcttttgggttaggaccacggattaatgcggtgagtcggatt
catggggatgccagattctgcgtagaactactgaccacgcgggatatgaatcgggtcaat
gagttggcagaagcggctgaattagccaatagtcggcgtaaatccttgcaaaaggaaatc
gtccatcaggtgggacagaaactgacccaggtggatctatcgacaactagtgtgattgtc
ctagaagacccccaatggaatccgggtgtcttgggtttggtggcagggcaggtagcccag
gagaccggaagaccgaccatactactgagtagtgatatcccagaggaaacgacgcaagca
tcccaattggttttagctaggggttcggcgcggtcaattaatggtgtggatttataccaa
ttagtaaaagaccagtcccatttattgcatcgatttggtggccatcccttcgctgcggga
ttgagtttgccagtggaaaatttgcccctatttcgggaagcgattaatcaaagattacgg
caaacggtggatgtaaatacattagtaccgacggttacagctgatatcgtcgttacggtt
ggcgatttagggaaggaattattcgcagaattaaaattattagaaccctgtgggatggga
aatccggtgccgaaattaatgattaaaaactgttggtttaccaaaactcggcatcggaat
caggaagatagtaaaggcaagaaaattcaatatataaaaaccgaatttgaaatttgtgat
caatctagttctaattcctttcccggggtttggtggggacattataaagatgaattgccg
acgggaaaggcagactgtattgttgagttggattttaatccctctaaaaatcgttatgaa
atccgtttaattgcagttcgtccggcacaggaacatcgagactattttcatcagcaatta
gacttcattattgaccagcgtcaggggatgggtgggacagaaaaaagaggaattactagt
agtaataataccctgattatcgaaaaatgtcccaccagttgggatgacttacaagcttgg
ttacgacgtgcccaatatcagcgacagcaactaatcttagcgtggtcaaaacccccatct
cgaccctactcagaaacctggaaaatattagtaggaatcgccaaatatctgagtcgtacc
caacaaccagtcacccgtaaccagttattagaaaaactgcaaattagtgaccaaacccta
tttattggactgagggcattaaaacatcttggctttaaattaactcgccatgacaccacc
agtagcggaaaaacccgaatcctcttttctttaacagaaaaacccaacctttcccaagcc
aaaatagctgttcaagccttttttgccgctttgcaagaagaacaatttcaacagcattat
tttagccaagttcccctcgctaccattcaatcaatggcaaggcgaattcagtag
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