Calothrix sp. PCC 6303: Cal6303_0193
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Entry
Cal6303_0193 CDS
T02372
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
calt
Calothrix sp. PCC 6303
Pathway
calt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
calt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cal6303_0193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calt03019
]
Cal6303_0193
Enzymes [BR:
calt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cal6303_0193
Messenger RNA biogenesis [BR:
calt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cal6303_0193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
AAA_22
UTP25_NTPase-like
DUF8086
P-loop_SecA
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
AFY99300
LinkDB
All DBs
Position
complement(231302..232771)
Genome browser
AA seq
489 aa
AA seq
DB search
MSFSTLGLSNEIVRAVTERGYTKPTPIQMQAIPAVLLGGDILAGAQTGTGKTASFTLPLL
HRLSSSDNSQDNSVQDASVETSRGVGSRDNFPIVNRLKPNLKTTGGYPRIRALILTPTRE
LAAQVQESVHDYGKYLNLRSMAMFGGVSINPQKQRLRNGVDILVATPGRLLDHVQQGTVN
LSGIEVLVLDEADRMLDMGFIRDIRRILSLLPKERQNLLFFATFSDSIKELAAGLLNRPT
MIEVARRNVTADTVSQKIYQVDHDKKRLLLAHLIKKDNWYQVLVFTRTKHGADRLVKQLG
EDRIQALAIHGNKSQSARTAALAKFKNGTLQVLVATDIAARGLDISDLPHVVNFDLPNVP
EDYVHRIGRTGRAGAKGEAVSLVCTDEQPLLAEIEKLIAKRLPREEITGFFSHPHPHKSS
ESIPEGRKQRPKGGYDQRTSARGAKSSPQTSPKKSAARTVAGGSKSGTKKPGTRRSGKRD
APPERRSDR
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttctacactcggcttgtccaatgaaattgtccgtgctgtaaccgagcggggt
tacacaaaacctacaccaattcaaatgcaagcgattcccgctgtattgttgggtggtgat
attctcgctggtgcccaaactggaactggaaaaaccgccagttttactttaccactccta
catcgtttgtcgtcatctgataatagccaggataatagtgtccaagatgcttctgtggag
acaagtaggggggtaggaagcagggataattttccgattgtgaatcggttaaagcctaat
ttaaaaactactggtggataccctcgaattcgagcgctaattttgaccccgacacgggaa
cttgcggcacaggtacaagaaagtgtccatgattatggaaagtacctaaatttgagatcc
atggcaatgttcggtggtgtcagtattaatccacaaaaacaacgtttgagaaatggtgta
gatattctggttgccacaccaggaagacttttagaccatgtacaacagggtactgtaaac
ctctcaggtattgaggttttggtgttagatgaagcggatagaatgctagatatgggtttt
attcgtgatatccggcgtattctttcccttttacccaaagaacgacagaatttgttgttt
ttcgccacattctccgacagtattaaggaacttgccgcagggttactaaatcgcccaaca
atgattgaggtggcacggcgcaatgtaactgctgatacagtatcacagaaaatctaccag
gtagatcacgacaagaaacgcctactattggctcacttgattaaaaaagataactggtat
caggtgctggtttttacccgcacaaagcatggggctgaccgcttagttaagcagttggga
gaagatagaatccaagccctggcaattcatggtaataagagtcagtcggcacgtactgct
gctttggcaaagttcaagaatgggactttacaggtgttagtggctacagatattgccgcg
cggggtcttgatattagtgatttgccccatgtagtcaactttgatttacccaatgtacca
gaggattacgtgcatcggattggtcgtactggtcgggctggtgccaaaggtgaggctgta
tcattagtgtgtacggatgaacaaccattgttggcagaaattgaaaaattgatcgctaag
agattgccaagggaagaaattactggctttttctcccatccacacccacataaatcatcc
gaatcaattccagaagggcgtaaacaaagaccaaaaggtggatatgatcaacgaacctct
gcaagaggtgctaaatcatcaccgcaaacatcgccaaaaaaatcggcagcgcgaactgta
gcgggtggttcaaaatctggtaccaagaaacctggaacacgacgttctggtaaacgtgat
gctcctccggaacgcagaagcgatcgctaa
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