Calothrix sp. PCC 6303: Cal6303_1980
Help
Entry
Cal6303_1980 CDS
T02372
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
calt
Calothrix sp. PCC 6303
Pathway
calt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
calt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cal6303_1980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
calt03400
]
Cal6303_1980
Enzymes [BR:
calt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cal6303_1980
DNA repair and recombination proteins [BR:
calt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Cal6303_1980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
PsbQ
Motif
Other DBs
NCBI-ProteinID:
AFZ01013
UniProt:
K9UYR9
LinkDB
All DBs
Position
2356210..2359740
Genome browser
AA seq
1176 aa
AA seq
DB search
MAFSSIVRALGRSPLTTELITKLNRQRELSLNGFPRLPKGLVASALAKAEGNNLCVICAT
LEEAGRWTAQLEAMGWRSVSFYPTSESSPYEAFDPETEMTWGQMQVLADLVKVEESTDSR
QIAVVATVGALQTHLPPPEALQPFCLTMKNGMEFDLDEFGDRITKLGYERVALVESEGQW
SRRGDIVDVFPVSSELPVRLEWFGDDIDQIREFDPATQRSALDKVAELVLTPTNYGVIIG
AALADNREFKSLSSKLPTKSDLDMEDTGIFPGSRRFLGLAYEKPASLLDYLPKNTIIAFD
EPEQCHAHSDRWVENAQEQWELLKDGDEEHPGVTLPLIHREFNQCLLAASQFKLLYLAEI
AETIITESGNNESGLNLVSRPLPVTPHQFAKIAETLRQERDRNFSVWLISAQPSRSVSLL
QEHDCQAQFIPNPNDYNAIDKLQINHTPVALKYSGLAELEGFVMPTYRIAVITDREFYGQ
HSLASPSYIRKRRQATSKQVDLNKLRPGDYVVHRNHGLGKFVKLESLTISDETRDYLVVQ
YADGLLRVAADQVGALSRFRTSANKNPELNKMTGKVWENTKNRVRKAIKKLAVDLLKLYA
ARAKQEGFAFPEDMPWQQELEDSFPYQATPDQLKATQDVKRDMESDRPMDRLVCGDVGFG
KTEVAIRAIFKAVTAGKQVALLAPTTILTQQHYHTIKERFSPYPVNVGLLNRFRSPAERR
EILKRLASGDLDIVVGTHQLLSKEISIKELGLLVVDEEQRFGVNQKEKIKSLKTQVDVLT
LSATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLAPRNPETIRAALRQELDRGGQVF
YVVPRVEGIEETAIKLREIVGGARIAIAHGQMDESQLESTMLTFSNGDADILVCTTIIES
GLDIPRVNTILIEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYPQQRTLSEAARQRLRAI
QEFTQLGSGYQLAMRDAEIRGVGNLLGAEQSGQLDVIGFDLYMEMLEEAIREIRGQEIPK
VDDTQIDLKLTAFIPSNYIPDADQKMSAYRAVAAAKSVDELMLISLEWNDRYGKIPTPAN
QLLRVMELKQLAKKIGFSRIKPEAKQHVALETPMEEPAWNLLAANLTDNMRSRFVYSPGK
VIVRGLAVLKADQQLKTLIDAFAKMQGVVADTVDPQ
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggctttttcctcgattgtgcgtgctttagggcgctcaccactgactaccgaattgatt
acaaagttaaatcgacaacgtgagttgtccttaaatggatttccccgtttgccgaaaggt
ttggtagcttcggcgttggcgaaggctgagggaaataacttatgtgtaatttgtgccact
ttggaggaggctggacggtggactgctcaattggaagcgatgggttggaggagtgtgagt
ttttacccgacttccgaatcttccccctatgaagcttttgatcccgaaacagagatgact
tggggacaaatgcaggttttggctgatttagtgaaggttgaagaatcaacagacagccgt
caaattgctgtggtggcaactgtgggagcgctacaaacccatttaccacctccggaagcg
ttacagcccttttgtttgacgatgaaaaacgggatggagtttgacttagatgaatttggc
gatcgcataactaaactaggctatgaaagagtggctttggtggagtcggaggggcaatgg
agccgccggggggatattgtggatgtgtttccagtatcttcggaattaccagtacggttg
gagtggtttggtgatgatattgaccaaattcgagagtttgatccagctacacaacgttct
gcccttgacaaagttgctgagttagttttgacccccaccaactacggggtgattattggg
gcggcattagcagataatcgagaatttaaaagccttagcagcaaattacccaccaaatcc
gatttggatatggaagacacgggaatttttcccggcagtcggcggtttttgggattagct
tacgaaaaacccgcttcattattagattatttacccaagaatacaattatcgcctttgac
gaaccagagcaatgtcacgcccatagcgatcgctgggtggaaaatgcccaggaacagtgg
gagttactcaaagatggggatgaggaacatcctggtgtcaccttgccactgattcaccga
gaatttaatcaatgtctattagctgcttcccaatttaagctactttatttggcggaaatt
gccgaaaccatcattacggaatcgggaaataatgaatcgggactaaatttagtcagtcgt
cctttacccgttaccccgcaccagtttgccaagatagcggagacgctgcggcaagaacgc
gatcgcaatttctctgtgtggctgatttctgctcaacccagtcgttcggtttccttactg
caagaacacgattgtcaggcacaatttatacctaatcctaatgattacaacgccattgat
aaactgcaaattaatcacactcccgtcgccctgaaatactcgggtttagcagagttggaa
ggctttgttatgcctacctaccgcatagctgtgattacagatcgggagttctatggacaa
cattccctcgccagtcccagctacatccgcaagcgtcgccaagccacttccaagcaagtt
gatctcaataagttacgtccgggagattacgtagttcaccgaaaccatggtttaggaaag
ttcgtcaaattagaaagcttaactatcagtgatgaaacccgcgattatttggtagttcaa
tatgccgatgggttacttcgggtagcagcagatcaagtgggggcgctttctcggttccgc
acctctgccaataaaaaccccgaactcaacaaaatgaccgggaaggtgtgggaaaatacc
aaaaatcgcgtccgcaaagcaattaaaaagctggcagtagatttgttgaaactctatgct
gccagagccaaacaagagggttttgctttccccgaagatatgccgtggcaacaggaatta
gaggattcattcccttaccaagccaccccagatcaacttaaagccacgcaagatgtgaag
cgggatatggaaagcgatcgcccaatggataggttggtatgtggggatgtgggttttggt
aaaactgaggtggcaattcgggcaattttcaaagccgtcacagccgggaaacaggtggca
ctattagcacccaccaccatcctcacccaacagcattaccacactatcaaagagcgcttt
tccccctaccccgtcaacgtcggtttactcaaccgcttccgcagtcctgccgaacgtcga
gaaattttgaaacgcttggcaagtggggatttagatatagttgtcggcactcaccaatta
ctgagtaaagaaatcagcatcaaagaattgggacttttagtagtagatgaggaacaacgc
tttggggtgaaccaaaaggaaaaaatcaaaagcctaaaaacccaagttgacgttctcacc
ctttcagccacacccatcccccgcaccctctacatgtcgctttcgggaattcgggagatg
agtttaattaccaccccacccccatcccgtcgccccatcaaaacccaccttgctccccga
aacccggaaactatccgggcagcactgcgccaagaattagacagaggtggtcaggttttc
tatgtagttccacgggtggaaggcatcgaagagacagccatcaaactacgagaaatcgta
ggcggagcgagaatagcgatcgcgcacgggcaaatggacgaaagtcaactggaatccacc
atgctcaccttcagtaatggggatgctgatatcttagtttgtaccaccatcatcgaatca
ggtttggatattccccgcgttaacaccatcttaattgaagatgctcaccgcttcggtttg
gcgcaactttaccaactgcggggacgggtgggacgtgcaggaatccaagcacatgcctgg
ttattttacccccaacaacgcaccctctcggaagccgcacgtcaaaggttacgcgcaatt
caggaattcactcaactgggttccggatatcaactagcgatgcgggatgccgaaattcgc
ggtgttggtaatctcctaggtgccgaacaatcaggacaactggatgtcataggtttcgat
ttatacatggaaatgttagaggaagccatccgcgagattcgtggacaggaaatacccaag
gttgatgacacccaaattgacctgaaactgacagcatttatccccagcaactacatcccc
gatgccgatcagaaaatgagcgcctaccgcgctgtagccgccgcaaaatcagtagatgaa
ctgatgctaattagtctggaatggaacgatagatacggtaaaattcccacaccagctaat
caacttctgcgggtaatggaacttaagcaactcgccaaaaaaatcggctttagccgcatc
aaacccgaagcaaaacagcatgttgccctagaaaccccaatggaagaaccagcatggaac
ctcctagcagcaaaccttactgacaacatgcgatcgcgcttcgtctacagccctggtaaa
gtcatagttaggggtttagccgtcctcaaagccgatcaacaactcaaaaccctaattgat
gccttcgctaaaatgcaaggtgtggttgccgacacagtagaccctcagtaa
DBGET
integrated database retrieval system
