Calothrix sp. PCC 6303: Cal6303_3287
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Entry
Cal6303_3287 CDS
T02372
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
calt
Calothrix sp. PCC 6303
Brite
KEGG Orthology (KO) [BR:
calt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
calt03016
]
Cal6303_3287
Enzymes [BR:
calt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Cal6303_3287
Transfer RNA biogenesis [BR:
calt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Cal6303_3287
Prokaryotic type
tRNA splicing ligases
Cal6303_3287
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AFZ02227
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All DBs
Position
3879864..3881045
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AA seq
393 aa
AA seq
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MAYEKLELSSPSPVLSWANHPLGSEETKMAKNVASLPFVFKHVALMPDVHLGKGALVGSV
IATKEAVIPAAVGVDIGCGMAAIKTPFNGDQLEGKLKKIRLDIEAAIPTGFNENPDVEKT
VSNWQRWRDFNNLHKGVQDLEVKAMRQMGSLGGGNHFIEVCLDSENQVWLMLHSGSRNIG
NKLAQCHIGTAKELAKMAGNKLPDPDLAYFIAGTDEFKAYWHDLQWSQNYAKVNRDVMMA
RFKRIVEKHVAGGKQSKPLLEVNCHHNYAEKEVHFGEEVYVTRKGAVRAQENDYGIIPGS
MGAKSYIVQGKGCANSFCSCSHGAGRLMSRTKAKNVYTLDDLVKQTEGVECRKDEGILDE
IPGAYKSIEEVMNQQSDLVKVVATLKQVVCVKG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggcttacgaaaaattagaactttccagcccatcccctgtattatcttgggcaaatcac
cccctgggtagtgaagaaaccaagatggcgaaaaatgtcgcatccttaccatttgtattc
aaacatgtggcattgatgcctgatgttcacttgggtaaaggtgccttagttggttcagtt
atcgccacaaaagaggcagtaattccggctgctgtgggtgttgatattggttgcgggatg
gctgcaattaaaaccccatttaatggtgatcaactggaaggtaaactgaagaaaatacgc
ttagatattgaagcagcgattcccactggctttaatgaaaaccctgatgtcgaaaagaca
gttagtaactggcaaagatggcgagatttcaacaacttacacaaaggtgtgcaagatttg
gaagttaaagccatgcgacaaatgggttcactgggtgggggtaatcacttcattgaggtg
tgtctcgacagtgaaaatcaagtttggttgatgttacattctggttcacggaatattggg
aataaactcgcccagtgccacatcggtactgccaaagagttggcgaaaatggcaggtaac
aaattacctgatccagatttggcttactttattgccggaacagatgaattcaaagcatat
tggcacgatttacagtggtcacaaaattacgccaaagtcaaccgtgatgtgatgatggca
agatttaagcggattgttgaaaaacatgtagcaggtggaaaacaaagtaaacctctatta
gaggtgaactgtcaccacaactatgctgagaaggaagtacattttggcgaagaggtatat
gtaacccgcaaaggtgctgttcgcgcacaagaaaacgactacggcatcatacctggttca
atgggggcaaaatcctacattgttcagggtaaaggctgcgctaatagcttttgttcttgt
agtcatggtgctggaaggttgatgtccagaactaaggctaaaaatgtttacaccctagat
gatttggtgaaacaaactgagggtgtggagtgccgcaaagatgaagggattttggatgaa
attccgggtgcatacaagtcaattgaggaagtgatgaaccaacaatctgacttagtgaag
gttgttgctactttgaaacaggttgtatgcgtgaagggttga
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