Calothrix sp. PCC 6303: Cal6303_3449
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Entry
Cal6303_3449 CDS
T02372
Name
(GenBank) Ribocuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
calt
Calothrix sp. PCC 6303
Pathway
calt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
calt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cal6303_3449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calt03019
]
Cal6303_3449
Messenger RNA biogenesis [BR:
calt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Cal6303_3449
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
eIF-1a
Motif
Other DBs
NCBI-ProteinID:
AFZ02383
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Position
4087314..4089152
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AA seq
612 aa
AA seq
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MAKNDTLGSLKIIPLGGLHEIGKNTCIFEYDDEIILLDAGLAFPTDGMHGVNIVLPDMTY
VRENRHKIKGMIVTHGHEDHIGGIAFHLKQFEIPVIYGPRLALAMLEGKLEEAGVRDRTE
LRSVKPRDTVRIGKHFLVEYIRNTHSIADSFTVAIHTPIGVVIHTGDFKFDHTPVDGEHF
DLQRLAEHGEKGVLCLLSDSTNSEIPGFTPSERSVYPNLDRAIAQASGRIFITTFASSVH
RINMILELAKKHNRVVSVVGRSMLNLIAHARNLGYIKCEDSLLKPLNAIRNLPNEQVLIL
TTGSQGETMSAMTRIAKKEHQHIRIREGDTVVFSANPIPGNTIAVVNVIDKLMMQGAKVI
YGRDKGMHVSGHGCQEDQKLMLSLTRPKFFVPVHGEHRMLVKHSETAQSVGVPKENMVLI
DNGDVIELTPNSLRVAGKVPAGLELVDISGSGMVSAKVLQERQKMAEEGLVTVAAAIDWN
GKLMARPEIHLRGVVTSIEKPMLQKWIQQRIEEILTARWSEFVQTFDGKIEVDWAAVQGL
IERDLARSLRKELHCQPTVTLLMQTPEEATMKAETTATTATPTATNTASIPAPVIANDGR
RRRTRTTAQVAS
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaaacgacactttaggttccttaaaaattatccccttgggtggattgcacgaa
attggtaagaatacatgcatttttgaatacgatgatgagatcatccttctagatgccgga
ttagctttccctacagatgggatgcatggtgtaaatattgtccttccagatatgacatac
gtgcgggagaatagacataaaatcaagggtatgattgtcacccacggacatgaagatcat
atcggtgggattgcatttcacctcaaacagtttgaaattcctgtaatttatggacctcgg
ttagcattggcaatgctagaaggtaaactggaagaagcaggagtacgcgatcgcactgaa
cttagaagcgttaaacctcgtgatacggtgaggattggcaaacacttcttagtagaatat
attcgcaatacccactcaattgccgatagttttacagtggcaattcatacaccaatagga
gtagtaatccacacaggtgacttcaaattcgaccacacaccagttgatggtgagcatttt
gacttgcagcgtttagcagaacatggtgagaagggcgtactctgtttattgagtgactcc
accaactccgaaatccccggatttaccccctccgaacggtcagtataccctaatttggat
cgtgcgatcgctcaagccagcggacggatatttatcaccacctttgcttccagcgttcac
cgcatcaacatgattctggaactcgccaaaaagcataaccgtgtcgtctccgtagttgga
cgctccatgctcaacttgatcgcccatgctcgtaacctgggatacatcaagtgtgaagat
agcctacttaaacccctcaacgctattcgtaacctacctaatgagcaagtactaatttta
actactggttctcagggtgaaacaatgtcagcaatgacaagaattgccaaaaaagaacac
cagcacattcgcattcgtgaaggtgataccgtagttttctccgccaaccccatccctgga
aacaccatcgcagtggtgaacgtcatcgacaaattgatgatgcagggtgcgaaagttata
tacggacgcgacaaaggaatgcacgtatccggacacggctgtcaagaagatcaaaaactg
atgttatctttgacacgtcccaaattcttcgttcctgttcacggtgaacaccgaatgctt
gtaaaacactcagaaacagcccagagtgtaggcgttcctaaagaaaacatggtactcatc
gataacggtgatgtaattgaattaactcctaattccctccgtgtagctgggaaagttccc
gccggattagaattagttgatatatcaggttcaggaatggtaagcgccaaagttctccaa
gaacgccaaaaaatggcagaagaaggactcgttacagttgccgccgccatcgactggaat
ggtaaactcatggcaagaccagaaatccatctccgaggtgtcgtcaccagcattgaaaaa
ccaatgctacaaaaatggattcaacagcgaattgaagaaatcctcactgccagatggtca
gaattcgtccaaacctttgatggtaaaatcgaagtagattgggcagcagtccaaggatta
atcgaaagagacttagcgcgatcgcttcgtaaagagttacattgtcagccaactgtgaca
ttgttaatgcaaactccagaagaagcaacaatgaaagcagaaaccacagctacaactgca
actccaaccgcaactaacactgcttccatacccgcacccgtaattgccaatgatggaaga
agaagaagaactagaactaccgcacaggtagcttcgtag
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