Calothrix sp. PCC 6303: Cal6303_4234
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Entry
Cal6303_4234 CDS
T02372
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
calt
Calothrix sp. PCC 6303
Pathway
calt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
calt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cal6303_4234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calt03019
]
Cal6303_4234
03400 DNA repair and recombination proteins [BR:
calt03400
]
Cal6303_4234
Enzymes [BR:
calt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cal6303_4234
Messenger RNA biogenesis [BR:
calt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cal6303_4234
DNA repair and recombination proteins [BR:
calt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Cal6303_4234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AFZ03144
UniProt:
K9V616
LinkDB
All DBs
Position
complement(5082083..5083525)
Genome browser
AA seq
480 aa
AA seq
DB search
MNRVSSPSWHQVRAEFQNIWGYEDFRSPQGEIIRCLLARKDALVLMPTGGGKSICFQLPA
LLQTGLTLVVSPLVALMENQVQELREKKLPAALLHSQLTSPQRREVLQKLEQQKLRLLYL
SPETLLSPPVWEKLIQPQLIINAIILDEAHCLVQWGDSFRSAYRRLGAVRKALLATKPVG
TKISVAAFTATAEPAAQKVIQEVLELQQPEIFSLNLYRPNLNPRVQVIWTPQARKHKLIK
FIQSQKNQSGLVYVRTRSDSDNLAIWLSEKGLNVSPYHAGLDAEERRKIESKWLNGTLQF
VVCTNAFGMGINKPDVRWVVHFHPPSLLSEYVQEIGRAGRDGKSADLLMLVSEPTGWLDS
GDKQRQEFFSNQIYQQQREAEQLAKKLPKKGEITAVMKQFPNSANSLSLLHRDGLLKWVD
PFNYVMIQGGRKPENIQEHSAKKMRKYFYTKTCRWQFLLSAFGFEKELGGFCGHCDRCRR
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgagtttcatctccgtcttggcatcaagttcgcgcagagtttcaaaatatttgg
ggttatgaagattttcgttcacctcaaggagaaattattcgttgcttattagcacgaaaa
gatgcactggtactcatgccaactggtggaggaaaatcgatttgttttcagctgccagct
ttactccaaactggattgacgctggtggtttccccattggttgcgttgatggaaaatcaa
gtgcaggaattgcgtgagaaaaaattacctgccgcacttttacatagtcaattaacttcg
ccacaaagacgagaagttttacagaaattagaacaacaaaagctgagattactatactta
tcaccggaaactttactaagtccacctgtttgggaaaagttaatccaaccgcagctaatt
attaacgctattatcctagatgaagctcattgtttggtgcagtggggcgatagttttcgt
tcggcataccgcagattaggagcagtccgtaaagctttacttgcaaccaagccagtagga
acaaaaattagcgttgcggcttttactgccactgccgagcctgcggctcaaaaggtgatt
caagaagtattagaattgcaacagccagaaatttttagtttaaatttatatcgtcctaat
ttgaatccccgtgtccaagtaatttggacacctcaagcaagaaaacataagttaatcaag
tttattcaaagtcaaaaaaatcaatctggattagtttatgtgcgaacaagaagcgatagc
gataatttagctatctggttatcggaaaaaggattaaatgtcagtccttatcatgcaggt
ttagatgctgaggaacgtcgaaaaattgagagtaaatggttgaatggaacactacaattt
gtggtatgtacaaatgcctttggaatgggtattaataaacctgatgttcgctgggtagta
cattttcatccgccgtcattactatcagaatatgttcaagaaattggacgtgctggtagg
gatggaaaatcagcagatttattaatgttagtgagtgaaccgactggatggttggattcg
ggagataaacaaagacaggaattttttagtaatcagatatatcaacagcagcgagaagcg
gaacaattggcgaaaaaattacctaaaaaaggggaaattaccgcagtgatgaaacagttc
cccaatagtgcaaatagtctttcattactacaccgggatgggttgttgaaatgggttgat
ccttttaattatgtgatgattcaaggtggaagaaagccggaaaatattcaggaacattca
gctaaaaaaatgcgtaaatatttttatactaaaacttgccgctggcaatttttgctgagt
gcttttggttttgagaaggaattaggtgggttttgtggacattgcgatcgctgtcggcgc
taa
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