Cicer arietinum (chickpea): 101493019
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Entry
101493019 CDS
T02819
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
cam
Cicer arietinum (chickpea)
Pathway
cam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101493019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cam03019
]
101493019
Messenger RNA biogenesis [BR:
cam03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101493019
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101493019
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
101493019
NCBI-ProteinID:
XP_073222765
UniProt:
A0A1S3E604
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All DBs
Position
1:51216507..51222509
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AA seq
661 aa
AA seq
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MSGLLNSSLNGSTSNLPDGAGRSFTTSFSSQSGAASPIYHHTGGIQGLHNMHGSFNVPNM
PSTLTSRNSTINSMPTGGVQQPTSSLSSGRFTSNNLPAALSQLSHGSSHGHSGVNSRGGI
SVVGNPGFSSSTNGVAGSIPGILPTSAAIGNRATVPGLGVSPILGNAGPRITSSMGNMVA
AGNIGRISSGGLSIPGLASRLNLNGNSGSGGLGVQGQNRLMSGVLPQGSPQVISMLGNSY
PSAGGPLSQSHIQAVHHLNSMGMLNDLNSSDSSPFDLNDFPQLSSRPSSAGGPQGQLGSL
RKQGLSPIVQQNQEFSIQNEDFPALPGYKGGSADFTMDMHQKEQLHDNAMSMMQSQHFSM
GRSAGFSLGGSYSAHRTQQQQQHAPSVSNSGVSFSSVNNQDLHLHGSDVFPSPNSTYHSQ
TSGPPGIGLRPLNSPNTVSGTGSYDQLIQQYQQHQNQSQFRLQQMSAANQSFRDHGMKSM
QTAQSTPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWSEEP
AKGDPEFSVLQCYYAKPPPALHQGYFAKFTLETLFYIFYSMPKDEAQLYAANELYKRGWF
YHKEHRMWYIRVPNMEPLVKTNTYERGSYHCFDPSTFETVRRDNFVLHYEMVEKRPSLPQ
H
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgtccgggttacttaattcttctctgaacggttctacttcaaatcttccagacggtgct
gggcgttctttcactacatcattctcgagtcagtctggtgcagcctccccaatttatcat
cacactggtggtattcaggggttgcacaacatgcatggaagcttcaacgttcccaacatg
cccagtacacttacatcaagaaactcaacaataaatagcatgccaactggaggggttcag
caacctacatcaagcctttctagtggaagatttacatcaaacaatttacctgctgctctg
tcacagctatctcatggaagctctcatggacattcaggagtcaacagtagaggaggtata
agtgttgtaggaaatcctggatttagtagtagcacaaatggagttgccggttctattcct
gggattcttcctacttctgctgcaattggtaaccgtgctactgttccaggattgggagta
tccccaattttgggaaatgcaggtcctcggataacaagttctatgggaaacatggttgct
gcggggaacatcgggaggataagctccggaggattgtccattcctggccttgcgtctcgc
ctaaatttgaatggaaatagtggatctggtggtctaggcgtgcaaggacagaatcgattg
atgagtggtgtgcttccacaaggttctcctcaggtaatttcaatgctaggaaattcttat
cccagtgctggaggtccactttcacaaagccatattcaagcagtacatcacttgaactct
atggggatgttgaatgatttgaattccagtgatagttcaccctttgatctcaatgacttc
cctcaactatcaagccgtcctagttctgctgggggccctcaaggacagttgggctcttta
cgaaaacagggtcttagtcctattgtacagcaaaaccaagagtttagcattcaaaatgag
gatttcccagctttaccaggatacaaaggtggtagtgcagattttacgatggatatgcac
cagaaagaacaacttcatgacaacgctatgtcaatgatgcagtctcaacatttctccatg
gggaggtctgctggttttagtttaggaggatcttattcagcacatcgtacacaacagcaa
cagcagcatgctccttctgtcagtaacagtggtgtctccttttcatctgtgaacaatcaa
gatcttcacctgcatgggtcagatgtttttccgtctcccaactctacataccattcccag
acaagtgggcctcctggcattggattgaggcccctaaattctccaaatacagtttctggt
acgggttcatatgaccagctcatccagcagtatcaacaacaccagaaccagtcccagttt
cgcctacagcaaatgtcagctgcaaatcagtcctttagggatcatggcatgaagtctatg
caaactgcacaatctactcctgatccatttggtttgcttggcttgttaagtgtgattagg
atgagtgatcctgatctgacatctcttgctcttggaatcgatcttacaacacttgggcta
aatttgaattcatctgaaaatcttcacaagactttcgggtctccttggtctgaggaacca
gctaagggtgacccagagtttagtgtgcttcaatgttattatgctaaaccacctcctgcc
ctacaccaaggttattttgcaaagtttacattggaaacactgttttacatattttacagc
atgcctaaagatgaagcacaactgtatgctgcaaatgaactttataaacgagggtggttt
tatcacaaagagcatcgtatgtggtatataagagttcccaacatggagccccttgtcaaa
actaacacatacgagagaggatcttaccattgttttgatccaagcactttcgaaactgtc
cggagggataattttgttcttcattatgaaatggtggaaaagagaccgtctttgccacag
cattga
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