Cicer arietinum (chickpea): 101497081
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Entry
101497081 CDS
T02819
Name
(RefSeq) regulator of nonsense transcripts UPF3
KO
K14328
regulator of nonsense transcripts 3
Organism
cam
Cicer arietinum (chickpea)
Pathway
cam03013
Nucleocytoplasmic transport
cam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cam00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101497081
03015 mRNA surveillance pathway
101497081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cam03019
]
101497081
Messenger RNA biogenesis [BR:
cam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101497081
mRNA cycle factors
P-body specific factors
101497081
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
101497081
NCBI-ProteinID:
XP_004499563
UniProt:
A0A1S2Y5B8
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Position
5:complement(372485..382211)
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AA seq
535 aa
AA seq
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MKVRSERGKTKVVIRHLPPSLTESDLIQQIHNRFSSTYNYFSFHLGNTSLKNQRYSRAYI
NFNSPDDVFDFADFFNGHVFVNEKGVQHKAIVEYAPSQRVPKPSTKKDGREGTIYKDPDY
LEFLKLIAKPQEHLPSAEIQLERKEAEQAGASKEAPIVTPLMEYVRQRRAVDSGPQVSLA
ASKVGRRARAALQGKLGLGNTRRGSEKKKYVQKENVKNANRKDSKDKLAFNVVPRREDQS
AESSTKGSYEIESLHGIEGSISGVPLTSDSGKKKILLLKGKQREIPKATEGMVKQQNAQS
ANSPISTTSKQNQRREASGRLIRSILLNSESRQSQPTSAAQHKIQILASENGKRPPRPFG
SRSGSSDQISSHDGGQVNSEGDSKRALDEKFIRRDLHGLSIVGDKTERRTRNKDRPDRGV
WAPLRRSDSSPSGNEHSSSSLAESTLSNPESVEGEVKENVYSGNRTGEFSASSGGRSSSS
VENGSQRNFTRRGAPYTVKDDCAVSLSEGKLSKKGVAGHSTHEKQVWVQKSSSGS
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtgcgttcggaaaggggaaaaacgaaagtagtgattaggcatttacctccttct
ctcactgaatctgatctcattcaacaaatccataaccgtttctcttccacctacaactac
ttctctttccatctcggcaacacaagtctcaagaatcaaaggtattccagagcatatata
aacttcaattctcctgatgatgttttcgactttgctgacttcttcaatggacacgttttt
gttaacgaaaaaggtgtccagcataaagcaatagttgagtatgcaccttctcaacgtgtt
ccaaagccaagtaccaaaaaggatggtcgtgaagggactatatataaagatccagactat
ctcgagttcctcaaactcattgcaaagcctcaggaacatcttcctagtgcagaaatacaa
ttggaaagaaaggaagctgagcaagctggggctagcaaggaagcacctattgtcacaccc
ctgatggaatatgttcgtcagaggcgtgctgttgacagtggtccacaggtttcattggca
gcatcaaaagttggcagaagagccagagctgctttgcaaggcaagcttggcttaggtaat
accagacgaggatctgaaaagaaaaagtatgttcagaaggaaaatgtcaagaatgctaat
cggaaagactcgaaagacaaattagcctttaatgtggtcccgaggcgtgaggatcagtct
gctgaatccagtacaaaaggaagttatgaaattgaatctttgcatggcattgaaggttcc
atctctggagtaccactgacttctgactcaggaaagaaaaaaatcctccttctgaaagga
aaacagcgggaaatccctaaagccactgaaggtatggtaaagcagcaaaatgcacaatct
gcaaattcgcccatttcaactacttcaaaacagaaccaaaggcgtgaagccagtggaagg
ttgattaggagcatacttctaaatagtgaatctcgtcaaagtcagcctacatctgctgca
caacataagattcaaatcttagcttctgagaatgggaagcgaccacctcgtccttttggc
tcaaggtccgggtcaagtgatcaaatctctagtcatgatggtgggcaagttaattctgaa
ggggattctaaaagggctttggatgaaaagttcataagaagagatttgcatggtttgagt
attgttggtgataaaacagaaagacgtactagaaacaaggacaggcctgatcgtggtgtt
tgggcacctcttcgccgttctgattcttcaccttctggtaatgagcactcatcatcctca
ctggcagaatctacactgtcaaatcctgaatcagttgaaggagaagtaaaagaaaatgtt
tattcaggaaacaggactggggaattctcagcttcttcaggtggacgtagtagttcctct
gttgagaatggttctcagagaaattttactcgccgtggagctccctatacagtgaaggat
gactgtgcagtcagtttgagtgaagggaaactatcaaagaaaggtgttgctgggcatagt
actcatgagaaacaagtttgggttcagaaatcatcttcaggctcttaa
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