Cicer arietinum (chickpea): 101498048
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Entry
101498048 CDS
T02819
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cam
Cicer arietinum (chickpea)
Pathway
cam03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cam00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101498048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cam03041
]
101498048
03009 Ribosome biogenesis [BR:
cam03009
]
101498048
Enzymes [BR:
cam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101498048
Spliceosome [BR:
cam03041
]
Complex A
U2 snRNP components
U2 related factors
101498048
Complex B
101498048
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
101498048
Ribosome biogenesis [BR:
cam03009
]
Eukaryotic type
90S particles
Helicases
101498048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
ABC_tran
T2SSE
AAA_30
AAA_7
Flavi_DEAD
FtsK_SpoIIIE
AAA_29
Motif
Other DBs
NCBI-GeneID:
101498048
NCBI-ProteinID:
XP_004495890
UniProt:
A0A1S2XYG8
LinkDB
All DBs
Position
Ca4:complement(7066499..7071330)
Genome browser
AA seq
721 aa
AA seq
DB search
MGTERKRKVSLFDVVDDSAAKMVKTNGVSIGNSLINRWNGKAYSQRYYEILEKRKTLPVW
HQKEDFLQVLRDNQTLILVGETGSGKTTQIPQFVLEAVELETADKRKKMMIACTQPRRVA
AMSVSRRVAEEMDVSIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVI
ILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGRLH
PVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKISKEVANLGD
QVGPVKAVPLYSTLPPAMQQKIFEPAPPPVKEGGPAGRKIVVSTNIAETSLTIDGIVYVI
DPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQPQ
TYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTK
LGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFIRPREAQKAADEAKARF
GHIDGDHLTLLNVYHAYKQNNEDASWCYDNFVNNRALKSADNVRQQLVRIMARFNLKLCS
TDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYN
EYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLEKLYKKREKDKDEARNR
K
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaagaggaaggtgagtttattcgacgtcgtggacgactctgcagct
aagatggtgaaaacaaacggcgtttcaatcggtaacagccttataaaccgatggaacggt
aaagcttactctcaaagatactatgaaattttggagaagaggaaaaccctacctgtttgg
caccagaaagaggatttcttgcaggttttgagggataaccagactttgattctcgttggt
gagactggtagtggaaaaaccacacagatccctcagtttgttttggaagctgttgaatta
gagacagctgataaacgcaagaagatgatgattgcatgcactcagcctcgtagagtggct
gcaatgtctgtttctcgccgtgtggccgaagagatggatgtgagtattggtgaagaggtt
ggttatagcatcagatttgaagattgtagtagtgcaaggactgttttgaagtatctaaca
gatggtatgcttttgagagaagcaatgacagatccacttttggaacgatacaaagtaatt
attcttgatgaggcacatgaaaggactttggctactgatgtgctatttggccttctaaag
gaagttcttaaaaacagacctgacttgaagttggttgttatgagtgcaacacttgaagct
gaaaagtttcagggctatttttttggagccccgcttatgaaagttcctggaaggctacat
cctgtggaaatcttttatactcaggaaccagaaagggattacttggaggctgcaattagg
acagtagtgcagattcacatgtgtgaacctcctggagacatacttgtttttctcactgga
gaggaagagatagaagatgcgtgccgcaaaatatctaaagaagttgcaaatttgggggat
caggtgggccctgtgaaagcagtaccattgtattctactcttcccccagctatgcagcag
aagatttttgagccagctccacctccagtaaaagagggaggccccgccggaaggaagatt
gtggtatcaacgaacatagcagaaacttccttgacaattgatggtatagtctatgttatt
gatcctggatttgctaagcagaaggtttataatcctcgagttcgtgttgagtcattgttg
gtgtctccaatatcaaaggctagtgcacaccaaagatctggacgtgctggaagaactcaa
ccagggaaatgctttagactgtataccgaaagaagtttcaataatgatcttcagcctcag
acgtatcctgaaattttgagatctaatcttgccaacacggttcttacattgaagaaacta
ggtatagatgatttagtgcattttgacttcatggaccctcctgcccctgaaaccttaatg
cgtgctttggaggtgttgaattacttgggtgcactggatgatgatggtaacttgacaaag
cttggtgagatcatgagcgagtttccattggaccctcagatgtcgaagatgcttgttgtt
agtcctgagttcaactgttcaaatgagattctttcaatttccgccatgctatcagtaccc
aactgctttatccggcctagggaggcacaaaaagctgcggatgaagcaaaagctaggttt
gggcacattgatggagatcatctcacactcttgaacgtataccatgcctacaagcaaaac
aatgaggatgcttcttggtgctacgacaacttcgttaataatagggcgctgaaatcggct
gataatgttcgacaacagcttgttcgtatcatggctcggtttaacttgaagttgtgcagc
accgacttcaatagtcgcgactactatatcaacataagaaaggcgatgctagcaggatat
tttatgcaggtggctcatcttgaacggacaggacactacttgacagtgaaagacaaccag
gtggtgcacttgcatccatcaaattgcctggaccacaagcctgagtgggttatctataat
gaatatgttcttaccagtcggaattttatacgtactgtgaccgacatacgcggtgaatgg
ttagttgatatagcaccccattactatgatttgtctaattttccacaatgtgaagcgaaa
cgtgttcttgaaaagctatacaagaaacgtgagaaagacaaggacgaagcccggaatcgt
aaatga
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