Cicer arietinum (chickpea): 101499285
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Entry
101499285 CDS
T02819
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cam
Cicer arietinum (chickpea)
Pathway
cam03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cam00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101499285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cam03041
]
101499285
Enzymes [BR:
cam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101499285
Spliceosome [BR:
cam03041
]
Complex C
Other components
Step II factors
101499285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
AAA_22
DEAD
HA2_C
AAA_19
cobW
ABC_tran
AAA_23
AAA_30
Helicase_RecD
AAA_29
SLFN-g3_helicase
AAA_16
ATPase_2
FtsK_SpoIIIE
PhoH
NPHP3_N
nSTAND3
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
101499285
NCBI-ProteinID:
XP_004504465
UniProt:
A0A1S2YH61
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All DBs
Position
6:10823672..10832459
Genome browser
AA seq
697 aa
AA seq
DB search
MATLPIVQYEEKIIQTVQNNPITVIIGETGSGKSTQLSQMLHRRGYSKIAVTQPRRVAAV
SVSRRVAQELGVQLGEEVGYAIRFEDRTSRNTRIKYLTDGVLLRESLADPELNDYSVIIL
DEAHERSLNTDILMGLMKRLVKLRSSNLKVLITSATLDGDKVSKFFRDCPVLNIPGKLYP
VEVLYSKERPLNYLEAALKTALDIHVRQPEGDILIFMTGQDDIEKLVSKLEDKVRALDEG
SCMDAIIFPLHGSLPPELQVRVFSPPPPNCRRIIVATNIAETSLTVDGVVYVIDSGYVKQ
RQYNPSSRMYSLDVIQISKVQANQRAGRAGRTRPGKCYRLYPSQMYHDEFLDVTVPEIQR
SSLAGSVLYLKSLDLPDIDILKFDFLDSPSSESLQDALKQLYLIDAIDENGAITSIGRKM
AELPLEPSLSRTLMEANDYGCITEALTVAAMLSTETTLLPGQSKTEKKRKRPISNLPDGS
GLGDHIKLLQIYEHWYQTDFDIAWCKDHGLQVRGMLFARDVRKQLSQIMQKIAKEPLDIR
TNGRGGEFRRDYRNLRKALCVGYANQLAERKMHHNGYRTLGFQGQVVQVHPSSALSSDEL
GKFPDYVVYHELIATPRPFMRNVCSVEMKWVIPIINKLNTLNVYKLSGGGMDHVEEEPEK
SIPDLPKQNVEVAVAADDSQSRIQAARERFLARKGNK
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggcaacccttcccattgtccaatacgaagaaaaaatcatccaaaccgtacaaaacaac
cctattaccgtcatcatcggagaaaccggttccggcaagagcactcaactctctcaaatg
cttcaccgccgcggttactctaaaatcgccgtcactcagccccgtcgtgtcgccgccgta
tccgtctccagacgagtcgcgcaagagctcggcgttcagctcggcgaggaagtaggttac
gctattcgattcgaagacagaacttcacgcaacacgcgcataaagtacctaactgatggt
gttctcctccgcgaaagtctagccgatccagaacttaacgattattctgttatcatatta
gatgaagctcatgaacggagtttgaacacggatatattgatgggactcatgaaacgtttg
gttaagcttcgttcctctaatctcaaagtgttgattacgtctgccacccttgatggtgac
aaggtatccaagttctttcgagattgccctgtattaaacatccctgggaagttgtatccc
gtggaggttctctatagcaaggagcgtccgttaaactatcttgaggcagctctcaaaaca
gctcttgatatacatgttcggcaaccggaaggggatattctaatattcatgactggacag
gatgacatagagaagttggtatctaagttggaagataaagttcgggctctcgatgaaggt
tcctgcatggatgctataatctttcctcttcatggttctttgccacctgaattgcaggtg
cgtgtatttagtcctccacctccaaattgcagacgaattattgttgctacaaatattgct
gaaacttctttgactgttgatggtgtagtgtatgttattgactctgggtatgtaaagcaa
aggcagtacaatccatctagtaggatgtattctcttgacgttattcaaattagcaaagtg
caagctaatcagcgggcaggcagagctgggcggacacggccagggaaatgctaccgccta
tatccttcccaaatgtaccatgacgagtttttggatgttacagttcctgaaattcagaga
tcctctcttgctggcagtgttctttacttgaagtcattagacctccctgatattgacatt
ctcaaatttgattttctcgattctccgtcatctgagtccttacaagatgccttgaagcaa
ttatatctgattgatgctattgatgaaaatggtgcaattacaagtattgggcgaaaaatg
gccgagcttccgttagaaccatccctgtcgagaactttaatggaagcaaacgattatggt
tgcataactgaggctttgactgttgctgccatgttatcaactgaaactacattgctacca
gggcagagcaagactgagaaaaagaggaaacgtccaatatctaatctccctgatggttct
ggcttgggtgaccacatcaaattattgcagatatacgagcattggtatcaaactgatttt
gacattgcttggtgcaaagaccatggcttgcaggtgcgaggaatgttgtttgccagagat
gtccgtaaacagttatctcagataatgcagaaaattgctaaggaacccttggatataaga
acaaatgggagagggggagagttccggcgggattatcgaaacttgaggaaggcgctatgt
gtgggttatgcgaatcagctggctgaaagaaagatgcatcataatggttatcgaactcta
ggtttccaaggccaagtagtccaggtgcatccatcatctgcattgagttctgatgagctg
gggaagtttccagactatgttgtgtaccatgagctaattgcaacaccacggccgttcatg
agaaatgtgtgctctgttgagatgaaatgggttatacccatcattaacaagcttaatacc
ttaaatgtgtacaaattaagtggtggtggtatggatcacgttgaggaggaacctgagaaa
agtattccagatttgcccaagcagaatgttgaggttgctgttgctgcagatgatagtcaa
agtagaatccaagctgccagagaacgatttcttgctcggaaaggcaataagtaa
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