Cicer arietinum (chickpea): 101504757
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Entry
101504757 CDS
T02819
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
cam
Cicer arietinum (chickpea)
Pathway
cam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cam00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101504757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cam03019
]
101504757
Messenger RNA biogenesis [BR:
cam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
101504757
mRNA cycle factors
Common to processing body (P body) and stress granule
101504757
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
101504757
NCBI-ProteinID:
XP_004491240
UniProt:
A0A1S2XLN3
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All DBs
Position
2:49538217..49544318
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AA seq
986 aa
AA seq
DB search
MIVEMDKMSAPSTWERAKRLYDKNLELEKRRRRSAQTQVPSDPNIWPQLRENYEAIILED
HAFSEKHGIEYALWLLHYKRIEELRAHYSAALTSASSKSYQGGKGSGRPERITKIRLQLK
TFLSEATGFYHDLIMKIKAKYGLPLGYFEDSENRIVMEKDGKKSAEMKKSLISCHRCLIY
LGDLARYKGLYGEGDSTKREFAAASSYYLQAATIWPSSGNPHHQLALLASYTGDELATIY
RYFRSLAVDSPFTTARDNLIVAFEKNRQSYSQLSGDVKAVAVKESSGQIAGRGRGKVEAK
LVTRSNGVEACPRKEGASNIQETYKSFSTRFVRLNGILFTRTSLETFTEVLSLISTGLRE
LLSSGQDEKLNFGQDTLENGLAIIRIISIIVFTVHNANKESEGQTYAEIVQRAVLLQNAL
TAAFELMSIIIERCVQLQDPSCSYLLPGILVFVEWLACCRDLASGNDADENQATVRSKFW
NNCISFLNKLLSVGPVSIEDDEEDTCFNNMSRYEEGETDNRLALWEDFELRGFVPLLPAQ
TILDFSRKHSLGSDGEKERKARVKRILAAGKALANVVRIDQKMIYFDAKGKKFTIGVEPR
ISDDFVLPSGIPIVEDSLKENAADKPKLGIVHPDNHQYEEGEDDDEVIVFKPIVAEKRAD
VVVVSSGAVHKDIESVPTVSGGDIKFDVNSGYNPPSEVNHQMLLPTSVSCMVPQHFHPVQ
QHSSRWQEEGMSLANSFGGLGFMENGHVVKPELPMHEAISIFNPASLAVPIQQSGTSTNL
FYGLSKAENLMIPSKVDTFASSGVITDNSSVKTSSVLQAGLKKSPVSRPSRHHGPPPGFS
HVSPKLDMESTISDSISGIPVMDDYSWLDGYQLPSSTKGLGPNGPITYTQSNSQQVNNNN
LSGTAYFPFPGKQVPSALQGDKQNGWLDYRTSELLNAHHHQQLQPQQLFANGNQQLQPQQ
PLTNGNQQLMPEQFQGQSIWTGRKFV
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgatagtagagatggataaaatgtctgctccttcaacgtgggagcgtgccaaacgcctt
tatgacaagaaccttgaattggagaaaaggcgccgtagatcagctcagacgcaggtccct
tcagacccaaatatctggccacagttgcgtgagaattatgaagcaataattctcgaggat
catgctttttctgagaagcacggtattgagtatgctctttggctgttgcattataaacga
attgaagaattaagggcacattacagtgctgctcttacttctgcaagctcaaaatcatat
cagggtgggaaaggttctgggcgacctgagcggataactaaaataaggctgcagttgaag
actttcctttcagaagcaactggattttatcacgatcttatcatgaaaatcaaagcaaag
tatgggcttcctcttggttactttgaagactcagagaaccggattgtgatggagaaagat
ggaaagaaatctgctgagatgaagaaaagtttgatatcttgtcatcgatgtttgatatac
ttaggtgatcttgctcgctacaaaggattgtatggtgaaggtgactcaacaaagcgtgag
ttcgcagcagcttctagttactatctacaggctgcgactatttggccttcaagtggaaat
ccccatcatcagcttgctttgttggcttcatatactggggatgagctggcaactatctat
cgttattttcggagtcttgctgtggatagtccatttacaactgctagagacaatttaata
gttgcatttgagaagaatcgtcaaagttactctcagctttccggtgatgttaaagctgtg
gcagtcaaggaatcttctgggcaaatagctggcagaggaagaggaaaagtggaagcaaaa
cttgtgacaaggagtaatggtgtggaagcttgccctagaaaggaaggagcatccaatata
caagagacttacaaatccttcagcactcgttttgtccgtctaaatggaatcttattcact
cgtacaagccttgagaccttcactgaagttctctctcttattagcactggcctgcgcgag
cttctatcatcaggtcaagatgaaaagctaaattttggccaggatacccttgagaatggt
cttgccattatcagaattatttccattatcgttttcacagttcataatgcaaataaggaa
tctgaaggacaaacttatgcagaaattgtacagcgtgcagttctacttcagaatgcttta
actgcagctttcgaactgatgagtattataatagagagatgtgtgcagttgcaggatcct
tcttgtagttatcttttaccaggcattttggtttttgttgagtggttggcatgttgtcgt
gatcttgcctcaggcaatgatgcggatgagaatcaagcaactgtaagatcaaaattttgg
aataattgtatttccttcttgaacaagctactatcagttgggcctgtgtctattgaagat
gatgaagaggatacttgctttaataacatgagtaggtatgaagaaggagaaactgataac
cggcttgctttgtgggaggactttgagttaagaggatttgttccacttctccctgcacaa
actatcttggatttttccaggaagcattcccttgggagtgatggtgaaaaagaaagaaaa
gcccgggtcaaaaggatattagctgcaggaaaggctttagcaaacgttgttaggattgat
cagaaaatgatatattttgacgcaaaaggaaagaagtttacaattggtgttgagcctcgt
atctcagatgattttgttcttccctctggcatacctattgtagaagattcattgaaagaa
aatgcagcagacaagccaaagttagggattgttcatccagacaaccaccagtatgaggaa
ggagaggatgacgacgaagttattgtttttaaacctatagtagctgagaagcgagctgat
gtagtggttgtctcatcaggggcagtccacaaagacatagagtcagtcccaacagtttct
ggaggggatataaaatttgacgttaattctggttataaccctcccagtgaagtgaaccat
caaatgttattacctacttctgttagttgtatggtgcctcaacacttccatccagttcag
caacattcttcaaggtggcaagaggagggaatgtctcttgccaacagttttggaggtctt
ggattcatggagaatgggcatgtggtgaaacctgagcttccaatgcatgaagctatatca
atcttcaaccccgcctcacttgcagttcctatccaacaatctggtactagtactaattta
ttttatggtctctccaaagctgaaaacttgatgataccatccaaagtcgatacttttgct
tcttctggagtcattactgataactcttctgttaagacatcatcagttctgcaagctggt
ttgaaaaaatctccagtcagccgtccttctaggcaccatggaccacctcccggtttcagt
catgtttctcctaaactagatatggaatccaccatttcagattcaattagtgggattcca
gtgatggatgactacagttggttggatgggtatcagctgccttcatcaaccaaaggttta
ggccccaatggtcctattacttacactcaatcaaattcccagcaagtaaataacaataat
ttgagtgggacagcgtactttccctttcctggaaaacaagttccatcagcattgcaaggg
gacaaacagaatggttggctagattaccgtacttctgagcttttaaatgcacaccatcat
cagcaactgcagccacaacaactattcgcaaatggaaatcagcaactgcagccacagcaa
ccactcacaaatggaaatcagcaactgatgcctgagcaatttcaaggacagtcaatctgg
acaggtcgtaaattcgtgtga
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