Cicer arietinum (chickpea): 101505369
Help
Entry
101505369 CDS
T02819
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cam
Cicer arietinum (chickpea)
Pathway
cam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cam00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101505369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cam03021
]
101505369
03019 Messenger RNA biogenesis [BR:
cam03019
]
101505369
Transcription machinery [BR:
cam03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101505369
Messenger RNA biogenesis [BR:
cam03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
101505369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
101505369
NCBI-ProteinID:
XP_012569987
LinkDB
All DBs
Position
Ca1:7231427..7240458
Genome browser
AA seq
677 aa
AA seq
DB search
MEDSEGVLSFDFEGGLDAAPPSAATVSVPAPPSGPIVHPDSSLPPSISSNGAAAVSGNIP
GRRSFRQTVCRHWLRSLCMKGEACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNED
IKECNMYKLGFCPNGPDCRYRHAKSPGPPPPIEEVLQKIQHLYSYNFNNSHKFIQQRGSS
YTQQVEKSQFPQGINSANQGVAGKPLAAESGNVQQQQQVQQSQQQVSQIQTQNLANGQPN
QANRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIF
SVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRN
PYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISIAAESKREEEKAKGVNPDN
AGENPDIVPFEDNEEEEEEESDEEEESFVQAVVPVGQGRGRGRGMMWPPHMPLGRGARPM
PGMQGFNPVMMGDGLSYGPGAPDGFGMPDLFGMGPRGFGPYGPRFSGDFAGPPAAMMFRG
RPSQPGMFPGGGFGMMMNPGRGPFMGGMGVPGPNPPRGGRPLNMPPMFPPPPPPPQNVNR
IAKRDQRTNDRNDRYSSGQEQGKSQDMLSQSGGPDDEMQYQQSGAPANNFRNEDSESEDE
APRRSRHGEGKKRKGEA
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggaggattccgagggagtcctcagtttcgatttcgagggcggcctcgacgctgctcct
ccctccgccgccaccgtctccgttcccgccccaccttccggacccatcgtccaccccgat
tcctccttaccaccttctatttcttccaatggtgccgccgccgtctccggcaacattcct
ggacgacggagcttccggcaaacggtttgccgacactggcttcgtagtttgtgtatgaag
ggagaagcgtgcgggtttttgcatcagtatgataaggctcgtatgccggtttgccggttt
tttaggttgtatggagagtgtcgtgagcaggattgtgtttataaacacaccaatgaagat
atcaaggaatgtaacatgtacaagttaggattttgtcctaatggaccagattgtcgatac
aggcatgcaaaatctcctggacctcctcctccaatagaagaagtccttcaaaagatccaa
catttatattcatacaattttaacaattctcacaaatttatccaacaaaggggttctagc
tatactcaacaagttgaaaagtctcagtttcctcaaggaattaattctgcaaaccaaggt
gtggctggaaaaccgttagctgccgagtcaggaaatgtccagcagcagcaacaagttcaa
cagtctcagcagcaagtcagccagatccaaacacaaaatcttgctaatggtcagcccaat
caagccaatcgaactgcaacccctttacctcaaggaatatctaggtattttattgttaag
agttgcaatcgtgaaaatttggagttatctgtacaacaaggagtatgggcaactcaaagg
agcaatgaatcaaaactaaatgaagcatttgactcggtggaaaatgtgatattgattttc
tcagtcaaccgtactcgacatttccagggatgtgcaaagatgacatcaagaattggcggt
tctgttgctggagggaactggaaatatgctcatggaacggcacattacgggcggaatttc
tctgttaaatggttgaagttatgtgaactgtcattccacaaaactcgacatttgagaaat
ccatacaatgagaacttaccagtgaagataagtagagattgtcaggagctggaaccctct
atcggagagcagttggcatccttgctttatcttgagccggatagcgaacttatggctatc
tcaattgcagcggagtctaaacgagaagaagagaaagcaaagggagtaaacccagataat
gcaggagaaaatccagatattgtcccatttgaagacaatgaagaggaggaagaggaagaa
agtgatgaagaggaggaaagctttgttcaagctgttgtgccagtgggtcaaggcagaggt
aggggcagaggtatgatgtggcctcctcacatgcctctcgggcgtggagccagacccatg
cctggaatgcaaggttttaaccctgtaatgatgggtgatggattatcctatgggcctggt
gcccccgatggttttggtatgccagatctttttggcatgggcccccgaggttttggtcca
tatggtcctaggttctctggtgattttgcaggccctcctgctgccatgatgttccgagga
cgaccttcacaacctggaatgtttcccggtggtggatttgggatgatgatgaatcctgga
cgtggtccctttatggggggaatgggggttccaggtccgaacccaccaagaggtggtagg
ccactcaatatgcctccaatgtttccaccccctccacccccacctcagaatgtgaaccgc
attgcaaagagagatcaaagaacaaatgatcggaatgataggtacagttcgggacaagag
caaggtaagagtcaagacatgctcagtcaaagtgggggtcctgacgatgaaatgcagtat
cagcaaagtggggctcctgcaaacaacttcaggaatgaagatagtgaaagcgaagacgag
gcaccaaggcggtcaagacatggagagggaaaaaaaagaaaaggcgaagcttag
DBGET
integrated database retrieval system
