Cicer arietinum (chickpea): 101507765
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Entry
101507765 CDS
T02819
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cam
Cicer arietinum (chickpea)
Pathway
cam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101507765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cam03019
]
101507765
03041 Spliceosome [BR:
cam03041
]
101507765
03009 Ribosome biogenesis [BR:
cam03009
]
101507765
03016 Transfer RNA biogenesis [BR:
cam03016
]
101507765
Enzymes [BR:
cam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101507765
Messenger RNA biogenesis [BR:
cam03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
101507765
Spliceosome [BR:
cam03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101507765
Complex C
U4/U6.U5 tri-SnRNP related factors
101507765
Ribosome biogenesis [BR:
cam03009
]
Eukaryotic type
Pre-60S particles
Helicases
101507765
Transfer RNA biogenesis [BR:
cam03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
101507765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
101507765
NCBI-ProteinID:
XP_004489138
UniProt:
A0A1S2XGT0
LinkDB
All DBs
Position
3:848154..857897
Genome browser
AA seq
977 aa
AA seq
DB search
MGSLKRKSPEEPSPPSQREEHVCVHDVSYPRGYVHTSSSSDETKKEPAKKFPFTLDPFQS
QAINCLENSESVMVSAHTSAGKTVVALYAIAMSLRNNQRVIYTSPIKALSNQKYREFKEE
FSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTREVAWIIFDEVHYMRDRERGVV
WEESIVMSPKNARFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTPLQHYIFPSGS
DGLYLVVDEKGKFREDSFQKALNALVPVADGDRKKENAKWQKGLVLGKAAEESDIFKMVK
MIIQRQYDPVILFSFSKRECEILAMQMAKMDLNGDEEKDNIEKIFWCAMDMLSDDDKKLP
QVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFT
NVRKFDGDKFRWISSGEYIQMSGRAGRRGIDDRGVCILMVDEKMEPSTAKSMVKGAADSL
NSAFHLSYNMILNQMRCEDGDPENLLRNSFFQFQADRAIPDLEKQIKALEEERESIVIDE
EDSLKDYYNLLEQLRSLKEEVRDIVLSPRHCLPFLQPGRLVSLQCTSSDEDLPPIFIEDQ
LTWGLIINFERIKGVSEDDASIKPEDASYKVDILTRCVVRKDKLGKKSVEIVPLKEHGEP
IVVSIPISQINTISNLRLYIPKDLLPLEARENTLKKVMETLSRFRDKGLPLLDPEEDMKI
QSSSYKKASRRIEALESLFEKHEIAKSPLIKQKLKVFHRKQEISAKIKSIKKTLRSSTTL
AFKDELKARKRVLRRLGYATSDNVVDLKGKVACEISSADELTLTELMFNGVFKDIKVEEM
VSLLSCFVWREKIQDAAKPREELDLLHAQLQDTARRVAQLQLECKVQIDVESFVKSYRPD
IMEAVYAWAKGSKFYEIMEITKVFEGSLIRAIRRLEEVLQQLIEAAKSIGETELEAKFEE
AVSKIKRDIVFAASLYL
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggggtcgctgaagagaaagtcgccggaagaaccatcgccaccttcacagagagaagaa
catgtctgtgtgcatgacgtgtcatatccacgtggctacgttcacacttcttcttcttct
gatgaaacaaaaaaagaacctgcaaagaagttcccttttacacttgacccctttcaatct
caagctattaattgtcttgaaaattctgaatctgttatggtgtctgcacatacatctgct
gggaaaactgttgtggcgttatatgcaattgcaatgtctcttcgaaacaatcaacgtgtt
atctacacttcacctatcaaggcgcttagtaatcagaagtatagagaatttaaagaagag
ttctctgatgttggtttaatgactggtgatgtcaccattgatcccaatgcttcttgcttg
gtcatgactacggaaatctggcgaagtatgcaatacaaagggtctgaggtcaccagggag
gtggcttggatcattttcgatgaggtgcattacatgcgtgatcgcgaaagaggtgtggtt
tgggaagagagcattgttatgtcgccaaagaatgcccgttttgtcttcctatctgccact
gtccctaatgctaaagaatttgctgattgggtggcaaaggtgcaccaacagccttgtcat
attgtttatacagattaccggccaactcctcttcaacattatatttttccttctggaagt
gatggtctatacttagttgtggatgaaaaggggaaatttcgcgaagacagttttcagaaa
gctttgaatgctcttgttcctgttgctgatggtgataggaaaaaggaaaacgccaagtgg
caaaaaggtttggtgctaggaaaggctgctgaagaaagcgacatattcaagatggtgaaa
atgatcattcaacgtcaatatgatcccgtgatactgttcagctttagcaagagggagtgt
gagattcttgcaatgcagatggcaaaaatggatcttaatggggatgaagagaaggacaac
atagaaaaaatattttggtgtgctatggatatgctttcagatgatgataagaagctgcct
caggtttcgaacatgctgcccttgctgaaacgtggaataggagtacatcactctggttta
ctcccaattctaaaggaagtgatagagatcttatttcaagaaggactaatcaagtgtctg
tttgccacagagaccttcagcattggtttaaacatgcctgcaaaaactgttgtttttaca
aatgtacgaaaattcgatggagacaagtttaggtggatatccagtggagaatatatacaa
atgagtggtcgtgctggtcgacgaggtattgatgaccggggagtatgtatcctcatggtt
gatgagaagatggagccttctactgctaaatcgatggttaaaggggcagctgatagttta
aatagtgcctttcatttaagctacaacatgattttgaaccaaatgcgctgtgaagatggt
gatccggaaaatttactccgtaattctttttttcagttccaagctgatcgtgccattccc
gatcttgagaaacaaataaaggctcttgaagaagagagggaatcaattgttattgacgaa
gaagacagtttgaaggattattacaatctgctggagcagcttagaagtttgaaggaggag
gttcgtgacattgtgttatctccaaggcactgtttaccttttttacagcctgggagactt
gtttctctccaatgcacttcaagtgatgaagatcttccccccatttttattgaggatcag
ttgacctgggggttgatcattaattttgaaaggattaagggtgtttctgaagatgatgca
agcataaagccggaagatgcatcttacaaggttgatattcttacaagatgtgtggtgagg
aaagataaacttggaaaaaaatctgttgagattgttcctctgaaagaacatggagaacct
attgtggtttccattcctatctctcagattaatacaattagcaacctgcgtctgtacata
ccaaaggatcttttaccattggaagctcgagaaaacacactgaaaaaagttatggaaact
ctttctagatttagagacaagggattgccacttctagaccctgaagaagacatgaagatt
caaagtagctcgtacaaaaaagcatcccgtagaatagaggctttggagagcctatttgaa
aagcatgaaattgcgaagtccccacttataaagcagaaattgaaagttttccacaggaag
caagagatctctgcaaaaattaagtccattaagaaaacattaagatcgtctactacatta
gcattcaaggatgaactcaaggcaagaaagagggttcttcgaaggctaggatatgccaca
agcgacaatgtggtggatttgaaggggaaggttgcttgtgaaattagtagtgcagatgaa
ttgaccttaacagaactcatgttcaatggtgtcttcaaggacataaaggtggaggagatg
gtttccctcctgtcttgttttgtgtggcgagaaaagatccaagatgccgccaaacctcgg
gaagaacttgatctgctccatgcacaattacaagacactgcccgaagagttgcacagctt
caacttgaatgcaaggtgcaaattgatgttgaaagttttgtaaagtcatataggcccgat
attatggaggcggtgtatgcttgggcgaaaggttcaaaattctacgagatcatggagatt
acaaaggtgtttgaaggtagcttgattagggcaattagacggctcgaggaagttcttcag
cagttaatagaagctgctaagtcaattggagaaactgagctcgaggcaaaatttgaggaa
gctgtgtccaagatcaagagggacattgtctttgcagcatccttgtatttgtag
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