Cicer arietinum (chickpea): 101515248
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Entry
101515248 CDS
T02819
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
cam
Cicer arietinum (chickpea)
Pathway
cam03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cam00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101515248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cam03041
]
101515248
Spliceosome [BR:
cam03041
]
Complex B
Other components
Prp19-related factors
101515248
Complex C
101515248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
RRM_YTH1
RRM_occluded
zf-CCCH
zf-CCCH_3
zf-CCCH_4
zf-CCCH_10
RRM_3
zf-CCCH_PARP12
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
101515248
NCBI-ProteinID:
XP_073225204
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Position
5:complement(63002378..63005900)
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AA seq
485 aa
AA seq
DB search
MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSNDAIPKSDVNREYFAE
EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMASLEAPEDESIKTLYVGGLDARVT
EQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQSSKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGMLYYNNPPPXXQERSYYP
SMDPQRMGALIPSQDGPPGGPSGSGENKPSSEKQQMPHYSHPMMPPPHGQYHHQYYPPYG
YMPPVPPYQQYPPPPYSAAMPQSQPPPANHSYQYPMQPGSSQTGSGQVGSAPAETGTSTS
GSQQQ
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatagattgctgagggaccacgaagccgacggttgggaacgctctgacttccca
atcatctgcgaatcatgccttggtgacagtccctatgttcgaatgacacgggctgagtat
gacaaagagtgcaagatttgtacaaggccatttactgtttttagatggagacccggtcga
gatgcaagatataagaaatctgagatctgtcagacatgtagtaagttgaaaaatgtttgt
caagtatgccttctggatcttgaatatgggcttccagttcaagtgcgtgacacagctctc
agtatcagttccaatgatgccattcccaagagtgatgttaatagggagtattttgctgaa
gaacacgaccgcaaggctagagctggtatagattatgaatcctcttttggtaaagcacga
ccaaatgatactatcttgaagcttcagaggacaacaccttattacaaaagaaatcgggca
catatttgcagtttctacataaggggtgagtgtactagaggagctgagtgcccttaccga
catgagatgccagtaactggggaactgtcgcaacaaaatatcaaagatcgttattatggg
gtgaatgatccggtggctatgaaactacttggcaaggcaggagagatggcctctctggag
gctcctgaggatgagagcattaaaacactttatgttggtggacttgatgctagggtcacc
gagcaggatttgcgggatcacttctatgcccatggagaaattgagtccatcaaaatggtt
ctccaacgagcttgtgcttttgtaacctatacaaccagagaaggtgcagaaaaggcagca
gaagaactctcaaacaaactggttattaagggcctaaggctaaagctgatgtggggcagg
cctcaatcatcaaaacccgagtctgatggctctgatcaagcaaggcagcaggcctctgtg
gctcatagtgggttgttgcctcgagcagttatatcacaacagcagaaccaggatcaaacc
caaggaatgctttactataacaatccacctccnnnnnnncaggaaagaagctattaccca
tcaatggatcctcaaagaatgggtgctcttattccatctcaagatggtcctcctggtggg
ccttctggttcaggggagaacaaaccgagttctgagaagcagcaaatgccacattattcc
catccaatgatgccacctccacatggccaatatcatcatcaatactatcctccatacggt
tacatgccaccagttcccccttatcaacagtacccaccaccaccatacagtgccgcaatg
cctcaatcccagccaccacctgcaaaccattcctatcaatatcctatgcaaccagggtct
tcacaaacagggtctggacaggttgggtctgctccggcagaaaccggaacatcaacatca
gggtcacagcagcaatga
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