Citrobacter amalonaticus Y19: F384_00955
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Entry
F384_00955 CDS
T03934
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cama
Citrobacter amalonaticus Y19
Pathway
cama03030
DNA replication
cama03430
Mismatch repair
cama03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cama00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F384_00955 (dnaE)
03430 Mismatch repair
F384_00955 (dnaE)
03440 Homologous recombination
F384_00955 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cama03032
]
F384_00955 (dnaE)
03400 DNA repair and recombination proteins [BR:
cama03400
]
F384_00955 (dnaE)
Enzymes [BR:
cama01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
F384_00955 (dnaE)
DNA replication proteins [BR:
cama03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
F384_00955 (dnaE)
DNA repair and recombination proteins [BR:
cama03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
F384_00955 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AKE57815
UniProt:
A0A0F6RDM8
LinkDB
All DBs
Position
216607..220089
Genome browser
AA seq
1160 aa
AA seq
DB search
MSEPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA
GIKPIVGADFHVQSEQMGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW
LIELKEGLILLSGGRMGDVGRSLLRGNSALVEECVAFYEEHFPDCYFLELIRTGRPDEEN
YLHAAVELAEARGLPVVATNDVRFINSEDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM
RSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDMTTEDFLVQKSKEGL
EERLEFLFPDEAERKEKRPPYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKHGEPPLDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRGTFEEGARKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY
LTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD
RLLNDLRGLIGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacctcgtttcgtccacctgcgggtgcacagcgactactccatgatcgatggg
ctggcgaaaaccgggccgctggtgaaaaaggcggccgcgttgggcatgcctgcactggcg
atcaccgattttacgaatctctgtggtctggtgaagttctacggagcgggccatggcgca
gggattaaacccattgttggcgctgatttccatgttcagagtgagcagatgggtgatgaa
ctcacgcatctgacggtactcgccgcgaataacaccggttatcaaaatctcaccctgctt
atctccaaagcgtatcagcgcggctatggtgcggcgggaccgatcattgaccgcgactgg
ctgatcgagctgaaagaagggttgatcctgctctccggcggtcgcatgggcgacgtcggg
cgcagtctgctgcgcggcaacagcgcgctggtggaagagtgtgtcgctttctacgaagag
cactttccggactgttacttccttgagctgatccggaccggcagacccgatgaagagaat
tatctgcatgcagccgttgaactggcggaagcacgcggtttgccggtggtggccaccaac
gacgtgcgctttatcaacagcgaagacttcgacgcgcatgaaatccgcgtcgccattcac
gatggttttacgctcgacgatcccaagcgtccgcgcaactactcgccgcagcagtatatg
cgctcggaagaggagatgtgcgaacttttctccgacattccggaagcactggaaaacacc
gtcgaaattgccaaacgctgcaacgtaacggtgcgtctgggtgagtacttcctgccgcag
ttcccgaccggtgatatgaccacggaagatttcctggtacagaaatcgaaagaggggctg
gaagagcgtctggaattcttgttcccggatgaagctgagcggaaagagaaacgtccgccg
tacgatgaacgcctggacattgagctacaggtgatcaaccagatggggttcccgggctac
ttcctcatcgtgatggaatttatccagtggtcgaaagataacggcgtgccggtaggcccg
gggcgtggttccggtgcgggatcgctggtggcctatgcgctgaaaatcaccgacctcgat
ccgctggaatttgacctgctgttcgaacgtttccttaacccggaacgtgtctccatgcct
gacttcgacgttgacttctgtatggagaaacgcgaccaggtgatcgaacacgttgctgac
atgtacggtcgtgatgcggtatcgcagattattaccttcggtacgatggcggcgaaagcg
gttatccgcgacgtgggccgtgtactgggccacccgtacggctttgtcgacaggatttcg
aagctggtaccacctgatcctgggatgacgctggcaaaagccttcgaagccgaaccgcaa
ctgcctgagatttacgaggcagatgaagaggtcaaagcgctgatcgacatggcgcgtaag
ctggaaggcgtgacccgtaacgccggtaaacacgccggtggggtggttatcgccccgacg
aaaatcaccgatttcgcgccgctgtactgtgatgaacaggggctgcatccggttacccag
tttgataaaaacgacgtggaatatgccggcctcgtgaagttcgacttcctcggcctgcgt
acgctcaccatcatcaactgggcgctggagatgatcaacgcccgccgcgagaagcacggc
gagccgccgctggatattgccgctatcccgctggatgacaagaaaagcttcgacatgctg
caacgctcggaaaccacggcggtcttccagcttgaatcccgcggcatgaaagacctgatt
aagcgtctgcagcctgactgcttcgaagatatgatagccctggtggcgctgttccgtccg
gggccgttgcagtccgggatggtggataacttcatcgaccgtaagcacgggcgcgaagag
atttcctatccggatgtgcagtggcaacacgaaagcctgaaacccgtgctggagccgacc
tacggcatcatcctgtatcaggaacaggtcatgcagattgcccaggtgctctctggctat
acccttggcggcgcggacatgctgcgccgtgcgatgggtaagaaaaagccggaagagatg
gccaagcagcgcggcaccttcgaagaaggggcgagaaagaacggcgttgatggcgaactg
gcgatgaaaatctttgacctggtggagaaattcgccgggtacggatttaacaaatcgcac
tcagccgcctacgcgctggtctcttaccagacgctgtggctgaaagcgcactatcctgcc
gagtttatggcggcggtgatgaccgcggatatggacaacaccgagaaagtggtggggctg
gtggacgaatgctggcgcatggggctgaagatcctgccgccggatatcaactccgggctg
taccacttccacgtcaacgacgacggcgagattgtttacggcatcggtgcgatcaaaggc
gtgggtgaaggtccgatcgaggcgatcatcgaggcgcgtaacaacggcggctacttccgc
gaattgttcgatctttgcgcgcgcaccgatactaaaaagctcaaccggcgggtgctggaa
aaactgatcatgtccggggcgttcgacaggctggggccacatcgtgccgcactgatgaac
tcgctgggcgatgcgctgaaagccgccgaccagcacgcgaaagcggaagcgattggtcag
gcggatatgttcggcgtgctggcggaagagccagagcagattgagcagtcctacgccagc
tgccagccgtggccggagcaggtggtgttagatggggaacgcgaaacgttggggctgtat
ctgacgggtcaccctatcaatcagtatttgaaagaaattgagcgctatgtcggaggctac
cggctgaaagacatgcatccgacagaacgtggtaaagtgaccacggctgcggggctcgtc
attgccgcaagggttatggtcaccaagcgcggcaatcgtatcggcatctgtacgctggat
gaccgttccggacgtctggaggtaatgttatttaccgacgctctggataaataccagcaa
ttgctggaaaaagaccgcatacttatcgtcagcggacaggtcagctttgatgacttcagc
ggggggcttaaaatgaccgcccgcgaagtgatggatattgacgaagcccgggaaaaatat
gctcgcgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttaaaccga
ctccgtcagtctctggaaccccaccgctctgggacaattccagtacatctctactatcag
agggcggatgcacgtgcgcggttgcgttttggcgcgacgtggcgtgtctctccgagcgat
cgtttgctaaacgatctccgtggcctcattggttcggagcaggtggaactggagtttgac
taa
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