Citrobacter amalonaticus Y19: F384_05380
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Entry
F384_05380 CDS
T03934
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cama
Citrobacter amalonaticus Y19
Pathway
cama03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cama00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F384_05380 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cama03019
]
F384_05380 (rne)
03009 Ribosome biogenesis [BR:
cama03009
]
F384_05380 (rne)
Enzymes [BR:
cama01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
F384_05380 (rne)
Messenger RNA biogenesis [BR:
cama03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F384_05380 (rne)
Ribosome biogenesis [BR:
cama03009
]
Prokaryotic type
rRNA processing factors
F384_05380 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AKE58613
UniProt:
A0A0F6REV8
LinkDB
All DBs
Position
complement(1179969..1183295)
Genome browser
AA seq
1108 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPTNYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYMLPKLHEEAMALPSSEEEFAERKRPEQPALATFAMPDVPP
EPTPAEPVVQAAAPKAVVAPVGPAEPGLLSRFFGALKSLFSGSEEAKPAEQPAPTVTEKP
ERQQDRRKRQNNRRDRNDRSERRDNRDNRGERSESGENRDENRRNRRNAQQNAETRDNRQ
PSTDAADKVKSGDEQQPRRERNRRRNEDKRQAQQEVKALNLDEQQTPETEQEERVRPVQP
RRKQRQLNQKVRYNNASEMEVVEAATEESVAAPIAEQTAPTQSTELVKVPLPVVTEVTSE
QDDNGEARDNTGMPRRSRRSPRHLRVSGQRRRRYRDERYPLQSPMPLTVACASPEMASGK
VWIRYPVARPQDAQPEAQEIEQVQAQSVVTEPQAVVAAVETVAAVETVVETVTEAPVQAE
AVVETSHPEVIAAPVAEQPQVIADADVPVAEDVAAQAEPVAEAQEAALVVEEAPEVVAVE
PETMAVETDVVVVEPVTAEPEAVAEPEVVAEPEVVAAPEAVVASEVVAEPVEAPVVVEAP
TVPATVAETVDVAPVTEITAPVAAETIAEHSHATAPMTRAPAPEYVPEASRHSDWQRPAF
AFDGKGAAGGHSATQHASAGPTRPQPVE
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgtgttgcccttgtagat
gggcagcgtctgtacgacctggatattgaaagtcctggacatgaacagaaaaaagcgaac
atctataaaggcaaaatcacccgtattgaaccgagtctggaagcagcttttgttgattac
ggcgctgaacgtcacggtttcctcccgttaaaagaaattgcccgcgaatatttccctacc
aattacaacgctcatggtcgtccgaacatcaaagatgtgctgcgcgaaggccaggaagtt
attgttcagattgataaagaagaacgcggcaataaaggcgctgcgctgaccacctttatc
agcctggcgggtagctatctggttctgatgccaaacaacccgcgcgcgggcggcatctct
cgtcgcatcgaaggtgatgaccgtacggaactgaaagaagcgctggcaagccttgaactg
cctgatggcatgggccttatcgtgcgtaccgcgggcgtcggcaaatctgccgaagcgctg
cagtgggacttaagtttccgtctgaaacactgggaagccattcagaaagcggctgaaagt
cgccctgctccgttcctgatccaccaggagagcaacgtgattgttcgcgccttccgcgac
tatctgcgtcaggatatcggtgaaatcctcatcgataacccgaaagtgctcgaactggcg
cgccagcatattgcggcgttgggtcgtccggatttcagtagcaaaattaagctctacacc
ggtgaaatcccgctgttcagccactatcagatcgagtcgcagattgagtccgccttccag
cgtgaagtgcgtctgccttccggtggctctatcgttatcgacagcactgaagcgttaacc
gccatcgacatcaactccgctcgcgcgacccgcggcggcgatatcgaagaaaccgcgttt
aacaccaacctggaagcggccgatgagatcgctcgtcagttgcgcctgcgtgacctcggc
ggcctgatcgttatcgacttcatagacatgaccccggtacgccatcagcgtgcggtggaa
aatcgtctgcgtgaagcggttcgtcaggatcgcgcgcgtatccagataagccatatttcc
cgcttcggcctgctggagatgtcccgtcagcgcctgagcccgtcgctgggcgagtccagc
catcacgtctgcccgcgctgtagcggtaccggcaccgtgcgcgacaacgaatcgctgtcc
ctgtctattctgcgtctgattgaagaagaagcgctgaaagagaatacccaggaagtccac
gcgattgtgcctgtaccgattgcctcttacctgctcaacgaaaagcgtacagcagtaaat
gcgattgaaacccgtcaggatggcgtgcgctgtgtgatcgtgccaaacgatcagatggaa
acgccgcactactccgtgctgcgcgtgcgtaaaggtgaagagacgccgaccctgagctac
atgctgccgaagctgcatgaagaagcaatggcgttaccgtcttctgaagaagagttcgcc
gaacgtaaacgcccggaacaacccgcccttgccacatttgcgatgccggacgttccgcct
gagccaacgcctgccgaaccggtagtgcaagccgctgcgccgaaggccgtggttgcccca
gtcggaccggctgaaccgggtctgttgagccgtttctttggcgcgctgaaatcactgttc
agcggtagcgaagaagcaaaacctgccgagcagcctgcaccgactgtcacagagaagccg
gaacgtcaacaggatcgccgtaagcgtcagaacaaccgccgcgaccgtaacgatcgcagc
gaacgtcgtgataaccgcgataatcgtggcgaacgttcagagagcggtgaaaaccgtgac
gagaaccgccgcaatcgccgcaacgcgcagcagaatgccgagacccgcgataaccgtcag
ccgtctactgacgctgcggataaagtgaagtctggtgatgagcagcagccgcgtcgcgaa
cgtaaccgccgtcgcaacgaagacaaacgtcaggctcagcaagaagtgaaagcgctgaat
ctcgacgagcagcagaccccggagaccgaacaggaagagcgcgttcgtccggttcagccg
cgccgtaaacagcgtcagttgaaccagaaagtccgctataacaatgcgtccgaaatggaa
gtggtagaagccgccaccgaagagagcgttgccgcaccgatcgcagaacagactgcaccg
acacaaagcaccgagctggtgaaagtgccattgccggtggtaactgaagttacgtctgag
caggatgacaacggtgaagcgcgtgataacacgggtatgccgcgtcgttcccgccgttcc
ccgcgccatctgcgcgtgagtggtcagcgtcgccgtcgttaccgtgatgagcgttaccca
ctgcagtcgccgatgccgttgacggttgcttgcgcctctcctgaaatggcgtccggtaaa
gtgtggatccgctacccggtagcacgtcctcaggatgcgcagccagaagcacaggaaatc
gaacaggtgcaggcacaatccgttgtgaccgaaccgcaagcggtagttgctgccgttgaa
accgttgctgcggttgaaacagttgttgaaacggtgacagaagcaccggttcaggctgaa
gcagtggttgaaacctcgcatccggaagtgatagccgccccggtggctgagcaaccgcaa
gtgattgccgatgccgatgtccctgtcgctgaagacgttgccgctcaagcagaacctgtc
gctgaagcgcaggaagccgctttggtagttgaagaggcgcctgaagtcgtcgcagtagaa
cctgaaacaatggcggtagaaactgacgttgttgtggttgaacctgtcaccgctgaacct
gaagcagttgcagagcctgaagtggttgcagaacctgaagtggttgcagcgcctgaagcg
gttgtagcgtctgaagtggttgcagaaccggttgaagcgcctgtggtcgttgaggcgcca
accgtacctgcgacggtcgccgaaaccgttgacgttgcaccggtcacggaaatcaccgca
ccggtagcagcagaaacgattgctgagcatagccacgcaaccgcaccgatgacccgcgcg
ccagcgccggaatacgtgccggaagcgtcgcgccacagtgactggcagcgccctgctttc
gcctttgatggcaaaggtgccgcaggtggtcacagcgccacgcagcatgcgtccgccgga
ccgacccgccctcaacctgtcgagtaa
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