Citrobacter amalonaticus Y19: F384_08030
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Entry
F384_08030 CDS
T03934
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cama
Citrobacter amalonaticus Y19
Brite
KEGG Orthology (KO) [BR:
cama00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cama03032
]
F384_08030
03400 DNA repair and recombination proteins [BR:
cama03400
]
F384_08030
Enzymes [BR:
cama01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
F384_08030
DNA replication proteins [BR:
cama03032
]
Prokaryotic type
DNA Topoisomerases
F384_08030
DNA repair and recombination proteins [BR:
cama03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
F384_08030
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AGE94425
LinkDB
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Position
complement(1785849..1788446)
Genome browser
AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKPK
KDERGALVNRMGVDPWHNWDAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIA
WHLREVIGGDDSRYSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEIDANTTTPSGDALPLQVTH
QNDKPFRPVNREQTLAAVSLLEKARYSVLEREDKPTSSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRDYIGDNFGKKYLPESPNQYASKEN
SQEAHEAIRPSDVSVLAETLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLTVGAGDF
RLKARGRILRFDGWTKVMPALRKGDEDRTLPAVNKGDALSLVELTPAQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY
DFTAQMENSLDQVANHETEWKGVLDNFFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCP
TCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGDDAETNALRAKR
RCQKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMACTNDECKNTRKILRNGDVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELFRFRDRLPEKLRYLADAPQQDPEGNKTLVRFSRKTKQQYV
AAEKDGKATGWSAFFVDGKWVEGKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctcttgtcatcgttgagtccccggcaaaagccaaaacgatcaacaagtat
ctgggtaatgactacgtggttaagtccagcgtcggtcatatccgtgatttgccgaccagt
ggctcagcagcaaaaaagagcgccgactctacctccaccaaaacggctaaaaagcccaaa
aaggatgaacgtggcgcgctcgtcaaccgtatgggtgttgacccgtggcacaactgggac
gcgcactatgaggtgctgcccggtaaagagaaggtcgtctctgaactgaaacaactggct
gaaaaagccgaccacatctatctcgcaaccgaccttgaccgcgaaggggaagccattgca
tggcacctgcgggaagtgatcggcggtgatgactcgcgttacagtcgcgtggtgtttaac
gaaattacgaagaatgcgattcgtcaggcgtttgaaaagccgggcgaactgaacattgat
cgagtaaacgctcaacaggcgcgtcgctttatggaccgcgtggtgggctatatggtctcg
ccgctgttgtggaagaagattgcccgcggcctgtcagccggtcgcgtacagtccgtggcg
gtacgtctggtcgttgagcgtgaacgtgaaattaaagcgtttgttccggaagagttctgg
gaaattgacgctaataccaccacgccttccggcgatgcgctgcccttgcaggtaacccac
cagaacgataagccgttccgtccggtgaatcgcgagcagacgcttgcggcggtgagtctg
ctggagaaagcgcgctacagcgttctggaacgtgaagacaaaccgaccagcagcaagccg
ggcgcgccgtttatcacctccacgctgcaacaggcggccagtacacgtctcggttttggt
gtgaaaaaaaccatgatgatggcgcagcgtctgtacgaagcgggctacatcacctatatg
cgtactgactcaaccaacctgagtcaggatgccgtcaacatggtgcgtgactatattggc
gataattttggcaaaaaatatctgccggaaagtccgaatcagtacgccagcaaagaaaac
tcacaggaagcgcacgaagcgattcgtccttctgatgtctccgtgctggcggaaacgctg
aaggatatggaagccgatgcgcagaaactgtatcagctgatctggcgtcagtttgttgcc
tgtcagatgacacctgcgcagtacgactccaccacgctgaccgttggcgcgggtgatttc
cgtctgaaggcgcgtggtcgtattctgcgcttcgacggctggacaaaagtgatgccagcg
ctgcgtaaaggtgacgaagaccggacgctgccggcagtcaataaaggcgatgccttgtct
ctggttgaactgaccccggctcagcacttcaccaaaccaccggcgcgcttcagcgaagcc
tcgctggtgaaagagctggaaaaacgcggaattggccgtccgtcgacctatgcgtcgatc
atttcgaccattcaggacaggggctatgtgcgcgtggaaaaccgtcgcttctatgcggaa
aaaatgggtgagattgtcaccgaccgcctggaagagaatttccgcgaactgatgaactac
gatttcaccgcgcagatggaaaacagcctcgaccaggtcgcgaatcacgaaaccgaatgg
aaaggtgtgctcgacaacttcttcagtgattttactcagcaactggacaaagctgagaag
gatccggaagaggggggaatgcgtccgaaccagatggtgctgaccagcatcgactgccca
acctgcggacgcaaaatggggattcgtaccgccagtactggcgtgttcctcggctgctcc
ggttatgcgctgtcgccgaaagagcgctgcaagaccaccattaacctggtaccggaaaac
gaagtcctgaacgtgctggaaggtgatgacgcggaaactaacgccctgcgcgccaaacgt
cgttgtcagaagtgcggcacggcgatggacagctacttgatcgatccgaaacgtaagcta
cacgtctgtggtaataacccgacctgcgacggctacgagatcgaagagggcgaattccgt
atcaaagggtatgacggtccgatcgtcgagtgcgaaaaatgtggttctgagatgcacctg
aagatggggcgtttcggtaagtacatggcctgtaccaacgacgagtgtaaaaacacccgt
aagatcctgcgtaacggtgacgttgcgccgccgaaagaagacccggttccgctaccagag
ttgccgtgtgaaaaatcggatgcgtatttcgtgctgcgtgatggcgctgccggggtcttc
ctggccgctaataccttcccgaaatcccgtgaaacgcgcgcgccgctggtggaagagttg
ttccgcttccgtgaccgcctgccggagaaactgcgttatctggccgatgcgccgcagcag
gatccagagggtaataaaacgctggtgcgttttagccgtaaaaccaaacagcagtatgtt
gccgctgaaaaagacgggaaagcgaccggctggtctgccttctttgttgatggtaaatgg
gtcgaaggcaagaagtaa
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