Citrobacter amalonaticus Y19: F384_15935
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Entry
F384_15935 CDS
T03934
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cama
Citrobacter amalonaticus Y19
Pathway
cama03410
Base excision repair
cama03430
Mismatch repair
cama03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cama00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
F384_15935
03430 Mismatch repair
F384_15935
03440 Homologous recombination
F384_15935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cama03400
]
F384_15935
DNA repair and recombination proteins [BR:
cama03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
F384_15935
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
F384_15935
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F384_15935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
PEP-utilizers
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
AKE59942
UniProt:
A0A0F6TWI8
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All DBs
Position
complement(3471987..3473720)
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AA seq
577 aa
AA seq
DB search
MKQQIQLRRREVDESAELPADLSPLLRRLYASRGVRSAQDLERSVKGMLPWQQLSGVEKA
VEILYNAFREGTRIIVVGDFDADGATSTALSVLGMRSLGCDNISYLVPNRFEDGYGLSPE
VVDQAHARGAQLIVTVDNGISSHAGVDHARALGIPVVVTDHHLPGETLPAAEAIINPNLT
DCDFPSKSLAGVGVAFYLMLALRTFLRDKGWFDERGITPPNLADLLDLVALGTVADVVPL
DANNRILTWQGLSRIRAGKCRPGIKALLEVSNRDAQKLAASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQAEALTLCEKLERSRETLPGGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLHP
GLMIKFGGHAMAAGLSLEETKFDLFQQRFGELVTEWLDPSLLQGEVVSDGPLSAAEMTME
VAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA
CWPDNGVREVELAYKLDINEFRGNRSLQLIIDNIWPV
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacaacagatacaacttcgtcggcgggaagtcgatgagtcggcagaactgcctgcc
gacctctcgccgctgttacgccgcttatatgccagtcgtggtgtacgcagcgcccaggat
ctcgagcgtagcgtaaaaggtatgctgccctggcagcaactgagcggcgtcgaaaaagcg
gtcgaaatcctctataacgcctttcgcgaggggacgcgcatcatcgtggttggcgacttc
gatgcggacggtgcgaccagtaccgccctgagcgtgttggggatgcgctcgctgggctgc
gataacatcagctacctggtgccaaaccgttttgaggatggttacggcttaagtccggaa
gtggtcgatcaggcccatgcgcgcggcgcgcagctgatcgtcaccgtagataacggtatc
tcttcccatgccggcgtggatcacgccagggcgctggggatcccggtggtggttaccgat
caccacctgccgggcgagacgctgccggctgccgaagccatcattaacccgaatctgact
gactgtgattttccgtcgaagtcgctggccggcgtgggcgtggcgttctacctgatgctc
gccctgcgcaccttcctgcgcgataagggctggtttgatgaacgaggcattacgccgcca
aacctggcggatctgctcgatctggtcgcgctgggcaccgtagcggacgtggtgccgctg
gatgccaataaccggatcctcacctggcagggcttaagccgtattcgcgccgggaaatgc
cgtccggggatcaaagcgctgctggaagtgtccaatcgtgatgcgcaaaagctcgccgcc
agtgatttaggtttcgcgctcggcccgcgtctgaacgccgcaggtcggctggatgatatg
tccgtcggcgtggcgctgctgctgtgcgataacatcggcgaagcgcgggtactggccaat
gagctggatgcgctgaaccagacgcgtaaagagattgagcaggggatgcaggcggaagcg
ctgaccctgtgcgagaagctggaacgcagtcgcgagacgctgcctggcggtctggcgatg
tatcatcctgagtggcatcagggggtggttgggatcctcgcctcgcgcattaaagagcgt
tttcaccgcccggtgatcgcttttgcaccggcaggcgacggcacgctgaaaggctccggg
cgttccattcaggggctgcacatgcgtgatgcgctggagcggttggatacgctgcatccg
gggctgatgattaaattcggtggtcatgcgatggcagcgggactgtcgctggaagagacg
aaattcgacctcttccagcagcgttttggcgagctggttaccgaatggctggatccgtcg
ctattacagggggaagtggtctctgacggcccgctgagcgcggcggagatgacgatggag
gtcgcgcagttgctgcgtgacgccggtccgtgggggcaaatgttcccggaaccgttgttt
gacgggcattttcgcctgcttcagcaacgcctggtcggcgagcggcatttgaaagtgatg
gtcgaacccgttggcgggggaccgctgctggatggcattgcttttaacgttgataccgcc
tgctggccggataacggtgtgcgcgaagtcgaactggcctacaaactggatattaacgaa
tttcgcggcaaccgcagtttgcagttaatcatcgataatatctggcccgtgtga
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