Citrobacter amalonaticus Y19: F384_17370
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Entry
F384_17370 CDS
T03934
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cama
Citrobacter amalonaticus Y19
Pathway
cama03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cama00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F384_17370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cama03019
]
F384_17370
03009 Ribosome biogenesis [BR:
cama03009
]
F384_17370
Enzymes [BR:
cama01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F384_17370
Messenger RNA biogenesis [BR:
cama03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F384_17370
Ribosome biogenesis [BR:
cama03009
]
Prokaryotic type
rRNA helicases
F384_17370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AKE60195
UniProt:
A0A0F6RGD8
LinkDB
All DBs
Position
complement(3783389..3785281)
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AA seq
630 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQSECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWTVWGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKLQPTAEDEELD
IETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRERNDRGPRGDRPERSGEDR
PRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPK
GMPGEVLQHFTRTRILNKPMNMQLVGDAQPHTERRGGGRSFGGERREGGRGFGGERREGG
RGDGRRFSGERREGSRAPRREDGPSRRRDA
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcc
cttaacgatctgggttacgaaaaaccatcaccgatccagtctgagtgtatcccgcacttg
ctgaacggtcgtgacgtactgggcatggcccagaccggcagcggtaaaactgcagcgttc
tccttaccgctgttacaaaatcttgatcctgagctgaaagcacctcaaatcctggtgctg
gcaccgacccgcgaactggcggttcaggtagctgaagccatgacggatttctctaaacat
atgcgcggcgtgaacgtggttgccctgtacggcggccagcgttatgacgtgcagttacgc
gccctgcgtcaagggccgcagatcgtcgtcggtacgccgggtcgtctgctggatcacctg
aaacgcggcaccctggatctctctaaactgagcggtctggttctggatgaagccgacgaa
atgctgcgcatgggcttcatcgaagacgttgaaaccattatggcgcagatcccggaaggt
catcagaccgctctgttctctgccacgatgccggaagcgattcgtcgcattacccgccgc
tttatgaaagagccgcaggaagtgcgcattcagtccagcatcactactcgcccggacatc
agccagagctactggactgtctggggcatgcgtaagaacgaagcgctggtgcgtttcctg
gaagcagaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgacgctggaa
gtggctgaagcgctggagcgtagcggctataacagtgcagcgctgaacggcgacatgaac
caggcgctgcgtgagcagacgctggaacgtctgaaagacggtcgtctggatatcctgatt
gcgaccgacgttgcggcccgtggcctggacgtagagcgtatcagcctggtggtaaactac
gatatcccgatggattccgagtcttacgttcaccgtattggccgtaccggtcgtgcgggg
cgtgcaggccgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgtaacatc
gaacgcaccatgaagctgaccattccggaagttgaactgccgaacgcagaactgctgggc
aaacgtcgtctggaaaaatttgcggctaaagtacagcaacagctggaaagtagcgatctg
gatcagtaccgtgcgctgctggctaaactgcagccgacagcggaagacgaagagctggat
atcgaaaccctggctgccgctctgctgaaaatggcacagggcgaacgtactctgatcgtt
ccgccagatgcgccgatgcgtccgaagcgtgagttccgtgaccgtgacgatcgtggtccg
cgtgagcgtaacgatcgtggcccgcgcggcgaccgtccagaacgcagcggtgaagaccgt
ccgcgtcgtgaacgtcgtgacgttggcgatatgcaactgtaccgcattgaagtgggtcgt
gatgacggcgtggaagttcgtcatatcgttggcgcgattgccaacgaaggcgacatcagc
agccgttacattggtaacatcaagctgttcgcttcgcactccaccatcgaactgccgaaa
ggtatgccgggtgaagtactgcagcactttacgcgtacccgcatcctcaacaaaccgatg
aacatgcagttggtgggcgatgcacagccgcacactgaacgtcgtggcggtggtcgtagc
ttcggcggcgaacgtcgtgaaggcggtcgcggtttcggcggtgagcgtcgtgaaggcggt
cgtggtgatggtcgtcgtttcagcggcgaacgtcgtgaaggtagccgtgcgccacgtcgt
gaagacggtcccagccgtcgtcgtgacgcgtaa
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