Citrobacter amalonaticus Y19: F384_17380
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Entry
F384_17380 CDS
T03934
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cama
Citrobacter amalonaticus Y19
Pathway
cama03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cama00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F384_17380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cama03019
]
F384_17380
03016 Transfer RNA biogenesis [BR:
cama03016
]
F384_17380
Enzymes [BR:
cama01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
F384_17380
Messenger RNA biogenesis [BR:
cama03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
F384_17380
Transfer RNA biogenesis [BR:
cama03016
]
Prokaryotic type
tRNA degradation factors
F384_17380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_2
KH_2
aRib
DUF2110
SLS1_KH2
DUF5813
Motif
Other DBs
NCBI-ProteinID:
AKE60197
UniProt:
A0A0F6TWQ6
LinkDB
All DBs
Position
complement(3786455..3788590)
Genome browser
AA seq
711 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA
GTEAAVLMVESEAELLSEDQMLGAVVFGHDQQQVVIQAINDLVKEAGKPRWDWQPEVVDA
ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAI
EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQVLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEADK
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA
INAPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGEKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPEAPASQQGE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
ttgcttaatccgatcgttcgtaaattccagtacggtcagcataccgtcacgctggaaacc
ggcatgatggcccgtcaggctactgccgctgttatggttagcatggacgacactgcggta
ttcgttaccgttgtcggccagaaaaaagcgaagccgggtcaggacttcttcccgctgacc
gtaaactatcaggagcgtacctacgctgctggtcgtatcccaggtagcttcttccgtcgt
gaaggccgcccaagcgaaggcgaaaccctgatcgcgcgtctgattgaccgcccggttcgc
ccgctgttcccggaaggtttcgtgaacgaagttcaggtcatcgcgaccgttgtttccgtt
aacccgcaggttaacccggatatcgtggcaatgattggtgcctctgctgcgctgtctctg
tctggtattccgttcaacggcccaatcggtgcggcacgtgttggttatatcaatgaccag
tacgtactgaacccgactcaggacgagctgaaagagagcaagctggatctggtggttgcc
ggtactgaagcggccgtactgatggttgaatccgaagcggaactgctgagcgaagatcag
atgctgggcgcagtcgtgttcggccacgatcagcagcaggtggttatccaggcgatcaac
gatctggtgaaagaagctggtaaaccgcgttgggactggcagccggaagtcgtagacgct
gcgctgaacgcgcgcgttgcggcactggctgaatctcgcctgagcgatgcttaccgtatc
accgacaaacaagagcgttatgctcaggttgacgtgatcaaatctgaaaccatcgcgact
ctggttgctgaagatgaaaccctggacgctaacgaactgggtgaaattctgcacgcaatc
gagaaaaacgttgtgcgtagccgtgtactggccggtgagccgcgtatcgatggtcgtgaa
aaagacatgatccgtggtctggacgtgcgtactggcgtgctgccgcgtactcacggttct
gcgctgttcacccgtggtgaaactcaggcgctggttaccgcaacgctggggaccgcacgt
gacgcacaggttcttgacgaactgatgggcgagcgtactgacaacttcctgttccactac
aacttccctccgtactccgtaggtgaaaccggcatggtcggttctccgaagcgtcgtgaa
attggtcatggtcgtctggcgaagcgcggcgtgctggctgttatgccggaagcagacaaa
ttcccgtacaccgttcgcgtggtgtctgaaatcaccgaatctaacggttcttcttccatg
gcttccgtctgtggcgcttctctggccctgatggacgcaggtgtgccgatcaaagctgcc
gttgcgggtatcgcaatgggtctggtgaaagaaggcgacaactttgtcgtactgtctgac
atcctgggtgacgaagatcacctcggcgatatggacttcaaagtggcaggttcccgcgac
ggtatctctgcactgcagatggatatcaaaattgaaggcatcaccaaagagatcatgcag
gttgcactgaaccaggctaaaggtgcgcgtctgcacatcctgggcgtgatggaacaggcg
atcaacgcgccgcgcggcgacatttctcagtttgctccgcgtatccacaccatcaagatc
aacccggacaagatcaaagacgtgatcggtaagggcggttctgtgatccgtgcgctgacc
gaagaaactggcaccaccatcgaaatcgaagatgacggtactgtgaagatcgcggcgact
gacggtgagaaagcgaaacatgctatccgtcgtatcgaagagatcaccgcagaaatcgaa
gtcggtcgtatctacaatggtaaagtgacccgtatcgttgactttggcgcatttgttgcc
atcggcggcggtaaagaaggtctggttcacatctcgcagatcgcggataagcgtgtagag
aaagtgaccgattacctgcagatgggccaggaagtaccggttaaagttctggaagttgat
cgccagggccgtgtacgtttgagcattaaagaagcaactgaacaatctcagccagcggct
gcaccggaagctccggctagccagcagggcgagtaa
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