Citrobacter amalonaticus Y19: F384_20535
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Entry
F384_20535 CDS
T03934
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
cama
Citrobacter amalonaticus Y19
Pathway
cama03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cama00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F384_20535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cama03019
]
F384_20535
Enzymes [BR:
cama01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F384_20535
Messenger RNA biogenesis [BR:
cama03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F384_20535
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CCDC138_C
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKE60779
UniProt:
A0A0F6TY50
LinkDB
All DBs
Position
complement(4451927..4453195)
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AA seq
422 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPKVIEALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKT
MAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRAIVFANTKHRCEDIWGSLAADGHRVGLLTGDVAQKKRLRILD
EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA
CEEYALNLPAIETYIGHSIPVSKYNPDALMNNLPKPLRLTRTRPGNGPRRSGGAPRNRRR
SG
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacatttaacagaacagaagttttccgacttcgccctgcacccaaaggtt
atcgaagcccttgaaaataaaggctttcataactgcacgcccattcaggccctcgcactg
ccgcttacgctggctggtcgcgatgttgccgggcaggcgcaaaccggtaccggaaaaacg
atggcgttcctgacgtcaacgtttcattatctcctctctcatcccgcgattgatgatcgc
aaggtgaaccagccacgcgccttaattatggcgccgacgcgtgagttagccgtgcagatc
cacgccgatgccgagccgctggcacagacgacgggtctgaagctgggcctcgcttacggc
ggcgacggttacgacaaacagctgaaggtgctggaaagcggcgtcgacattttaatcggc
accacgggtcgtctgatcgactacgcgaaacagaatcacatcaatctgggcgccatccag
gtggtggtcctcgatgaagccgatcgcatgtacgatcttggctttattaaagatatccgc
tggctgttccgccgcatgccgccggccaaccagcgcctgaacatgttgttctctgctacc
ctctcttatcgcgtacgtgaactggcgttcgaacaaatgaacaacgccgaatacgtcgaa
gtcgagccggaacagaaaacgggtcaccgtattaaagaagagcttttctatccgtctaac
gaagagaaaatgcgcttactgcaaacgctaatcgaagaagagtggccggatcgcgccatt
gtcttcgctaacaccaaacaccgttgcgaagatatctggggtagccttgccgctgacggt
catcgcgtcggcttgctgacgggtgacgtagcgcagaaaaaacgtctgcgtatcctcgac
gaattcacccgtggcgatctggatatcctggtcgcaaccgacgtcgccgcgcgcggcctg
cacattcctgccgtcacgcacgtctttaactacgatctgcctgacgattgcgaagactac
gtacaccgtattggtcgtacgggccgcgctggcgcaagcggtcactccatcagtctggcc
tgtgaagagtacgccctgaacctgcctgcgattgaaacctacattggtcactcgattccg
gtgagtaaatataatccggatgcgttgatgaacaatctgccgaagccgctgcgtctgaca
cgcacgcgtcctggcaatggcccgcgtcgctctggcggtgccccgcgcaatcgtcgccgt
tcaggttaa
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