Citrobacter amalonaticus Y19: F384_24905
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Entry
F384_24905 CDS
T03934
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cama
Citrobacter amalonaticus Y19
Pathway
cama02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cama00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
F384_24905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cama03021
]
F384_24905
Transcription machinery [BR:
cama03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
F384_24905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
CENP-B_dimeris
Motif
Other DBs
NCBI-ProteinID:
AKE61578
UniProt:
A0A0F6RI76
LinkDB
All DBs
Position
complement(5336119..5337966)
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AA seq
615 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTA
THVGSELSQEDMDDDEDEDEEDSDDDSSDDDNSIDPELAREKFGELRTQYEVTRDTIKAK
GRSHADAQTEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMP
KKNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVADDVHRGLQKLRQIEEETGLTIEQV
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
TPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTE
SLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPSRSEVLRSFLDD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagcttcttgtcacccgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattcagatcaa
attgaagatatcatccaaatgatcaacgacatgggtattcaggtgatggaagaagcaccg
gatgccgatgatctgctgcttgctgaaaacaccaccagtaccgacgaagacgcggaagaa
gcggctgcgcaagttctgtccagcgtagagtctgaaatcggtcgtaccactgacccggtt
cgcatgtacatgcgtgaaatgggtaccgttgaactgttgacccgcgaaggcgaaatcgat
attgcgaaacgcatcgaagacgggatcaaccaggttcagtgctccgttgctgaatatcca
gaagccattacctatctgcttgagcaatacgatcgcgttgaagctgaagaagcccgtctg
tccgatctgatcaccggttttgtcgatccgaacgcggaagaagatctggcccctaccgcc
actcacgtcggctctgagttatctcaggaagacatggatgacgatgaggacgaagacgaa
gaagatagcgacgacgacagcagcgatgacgacaacagcatcgatcctgagctggcacgc
gagaagttcggcgaactgcgtacgcagtacgaagtgacgcgtgacaccatcaaagcgaag
ggtcgtagccatgccgatgcccagactgagatcctgaagctgtctgaagttttcaagcag
ttccgtctggtaccgaagcagtttgactacctcgtgaacagcatgcgcgtcatgatggac
agggttcgtacccaggaacgtctgatcatgaagctctgcgtcgagcagtgcaaaatgccg
aagaagaacttcatcaccctgttcaccggcaatgaaaccagcgaaacctggttcaacgcg
gctatcgcgatgaacaagccatggtccgaaaaactgcacgatgtggccgatgacgttcat
cgtggtctgcagaaactgcgtcagattgaagaagaaaccggtctgaccatcgaacaggtc
aaagacatcaaccgtcgcatgtccatcggcgaagcgaaagcgcgtcgtgcgaagaaagag
atggttgaagcaaacttacgtctggttatctctatcgccaagaaatacaccaaccgtggt
ctgcagttcctggatctgattcaggaaggcaacatcggtttgatgaaagcggttgataag
tttgaataccgtcgtggttacaagttctccacctacgctacctggtggatccgtcaggcg
atcacccgctctatcgcggatcaggcgcgcaccatccgtattccggtgcatatgattgag
acgatcaacaaactcaaccgtatctcccgccagatgctgcaagagatgggccgcgagccg
acgccggaagaactggctgagcgcatgctgatgccggaagacaagatccgtaaagtgctg
aagatcgccaaagagccgatctccatggaaaccccgatcggtgacgatgaagattcgcat
ctgggtgatttcatcgaggataccaccctcgagctgccgctggattctgccacaacggaa
agcctgcgtgcggcaacgcacgacgtgctggcgggcctgaccgcgcgtgaagcgaaagtc
ctgcgtatgcgtttcggtatcgacatgaacaccgaccacacgctggaagaagtgggtaaa
cagtttgacgttacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgtaaactg
cgtcacccgagccgttctgaagtactgcgtagcttcctggacgattaa
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