Carcharhinus amblyrhynchos (grey reef shark): 145339826
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Entry
145339826 CDS
T12063
Symbol
vcp
Name
(RefSeq) transitional endoplasmic reticulum ATPase isoform X1
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
camb
Carcharhinus amblyrhynchos (grey reef shark)
Pathway
camb04137
Mitophagy - animal
camb04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
camb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
145339826 (vcp)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
145339826 (vcp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
camb03019
]
145339826 (vcp)
03009 Ribosome biogenesis [BR:
camb03009
]
145339826 (vcp)
04131 Membrane trafficking [BR:
camb04131
]
145339826 (vcp)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
camb04147
]
145339826 (vcp)
Messenger RNA biogenesis [BR:
camb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
145339826 (vcp)
Ribosome biogenesis [BR:
camb03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
145339826 (vcp)
Membrane trafficking [BR:
camb04131
]
SNARE
SNARE associated proteins
Others
145339826 (vcp)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
145339826 (vcp)
Exosome [BR:
camb04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
145339826 (vcp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
NPHP3_N
Vps4_C
RNA_helicase
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
ATPase_2
AAA_7
ATPase
AAA_18
DUF815
ABC_tran
IstB_IS21
nSTAND_NTPase5
NB-ARC
TsaE
AAA_24
ResIII
Viral_helicase1
NACHT
SLFN-g3_helicase
Zot
Motif
Other DBs
NCBI-GeneID:
145339826
NCBI-ProteinID:
XP_080040517
LinkDB
All DBs
Position
1:complement(55876294..55934010)
Genome browser
AA seq
806 aa
AA seq
DB search
MASGGESKSDDLSTAILKQKHRPNRLIVDEAINEDNSVVSLSQAKMDELQLFRGDTVLLK
GKKRRETVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDIVSIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDVIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV
INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRGAILKAN
LRKSPIAKEVDLEYLAKTTNGFSGADLTEICQRACKLAIRESIESEIRRERERQGNPSAM
EVEEDDPVPEIRKDHFEEAMRYARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSSSQAG
AGPSQGTGGGSGGNMFSEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgggaggagagtccaaatctgatgacttgtcaactgctatactgaagcagaag
cacagacccaatcgattaattgttgatgaagcaattaatgaagacaacagcgtggtttca
ttgtcccaggcaaagatggacgaacttcaacttttcagaggtgatacggtattactgaaa
gggaagaagagacgggagacagtttgtattgttctgtcagatgatacatgttcggatgag
aaggttcgcatgaacagggttgtgcgcaacaacttgagagtcagactgggtgatattgtg
agcattcagccatgcccagatgtaaagtatggcaagcgaattcatgtgcttcctattgat
gatacagttgagggcattactggaaatctatttgaagtctatctcaagccctattttttg
gaagcttatcgaccaataaggaaaggtgacattttcctggttcgtggtggaatgcgtgct
gtggaattcaaagtggtggaaacagatccaagtccatattgtatagttgctccagacaca
gtcattcactgtgagggtgaacccatcaaacgagaggatgaggaagaatctttgaatgaa
gttggatatgatgatattggtgggtgcagaaagcaacttgctcaaatcaaagagatggtg
gaactgcctctccgtcaccctgcactattcaaagctattggtgtcaagcctccacggggt
attctgttgtatggtccgcctggtacaggcaagacgctgatagctcgtgctgttgcaaat
gaaactggtgcatttttctttcttataaatggaccagagataatgagcaaacttgcagga
gaatcagagagcaatttgagaaaagcatttgaagaggctgagaaaaatgctcctgctata
atttttattgatgaattggatgctattgctccaaagagagagaagacacatggtgaagtg
gaacgtcgcattgtgtcacagctgctcactttgatggatggtttgaagcagcgggctcat
gtgattgttatggcagctacaaatcgcccaaacagcattgatcctgcccttcgacgattt
ggccggtttgatagagaggtggatattggtattcctgatgccacaggtcgactggaaatc
ttacagattcacacaaagaacatgaagttggcagatgatgtagaccttgaacaggttgcc
aatgaaactcatggtcacgttggtgccgacttggctgccttatgctcagaagctgctctt
caagctattaggaaaaagatggatgttattgatctggaagatgaaacaattgatgctgaa
gttatgaattcacttgcagttaccatggatgatttcaggtgggctttgagccagagcaat
ccttcagcgctgcgtgaaaccgtggttgaggttcctcaggtaacgtgggaagacattggt
ggactggaggatgtgaagagggagcttcaggaacttgtacaatatcctgtggaacaccca
gacaaattcctgaaatttggcatgaccccctcaaagggtgtacttttttatggaccacct
ggttgtggtaaaactttgctggctaaagccattgcaaatgaatgccaggccaactttatc
tcgatcaagggaccagaacttcttaccatgtggtttggagaatctgaggcaaatgtccgc
gaaatctttgataaggcccgtcaagctgccccttgtgtactgttctttgatgaacttgat
tccattgctaaggctcgtggtggcaacatcggtgatggtggaggtgctgctgatcgtgtt
ataaaccagatcctaactgaaatggatggtatgtccaccaaaaagaatgtctttatcatt
ggtgccactaaccgccctgatattattgaccctgcaattttgcgtcctggacgccttgac
caactgatctacatcccactgcctgatgagaaatctcgtggtgctattctgaaagccaac
ttgaggaagtctcctattgctaaggaagttgacttggagtatttggctaagaccaccaat
gggttttctggagctgatttgaccgagatctgtcaacgcgcttgtaaacttgcaatcaga
gaatctattgaaagtgagatcaggcgagaacgtgaaagacagggcaacccttcagccatg
gaggttgaagaagatgacccagttcctgaaatacgcaaggaccattttgaggaagctatg
cgctatgcacgtcgatctgtcagtgataatgatattcgaaaatatgaaatgtttgcacaa
acactgcagcagagtcgtggatttggcagtttcagattcccatctagtagccaagcaggt
gcaggaccaagccaaggaactggaggaggaagtggtggaaacatgttcagtgaagacaat
gatgatgatctgtatggttaa
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