Carcharhinus amblyrhynchos (grey reef shark): 145362011
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Entry
145362011 CDS
T12063
Symbol
LOC145362011
Name
(RefSeq) uncharacterized protein LOC145362011 isoform X1
KO
K19719
collagen type II alpha
Organism
camb Carcharhinus amblyrhynchos (grey reef shark)
Pathway
camb04510
Focal adhesion
camb04512
ECM-receptor interaction
camb04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
camb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
145362011 (LOC145362011)
04518 Integrin signaling
145362011 (LOC145362011)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
145362011 (LOC145362011)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
camb00536
]
145362011 (LOC145362011)
Glycosaminoglycan binding proteins [BR:
camb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
145362011 (LOC145362011)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
145362011
NCBI-ProteinID:
XP_080074161
LinkDB
All DBs
Position
X:7429121..7519487
Genome browser
AA seq
1492 aa
AA seq
DB search
MFRFVDTRTLVLLAATQAILLAVVKCQGTDIQDLKVICKQDGQKYSDKDVWKPEPCRICV
CDAGIILCDEIICEDLKDCPNPEIPFGECCPVCLNDRAAPIDRQRGPKGQKGEPGDIKDV
VGPRGPPGPQGPSGEQGPRGPRGEKGEAGVPGPRGRDGEPGTPGNPGPPGPPGSSGMSDF
GGNFASQMARGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGSPGEPGESGA
AGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGL
DGAKGEAGAAGVKGEAGAAGENGAPGPLGPRGLPGERGRPGPPGSAGARGNDGLPGPAGP
PGPVGPAGAPGFPGAPGSKGEAGPTGARGPEGAQGSRGESGSPGSPGPAGAPGNPGTDGI
PGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQQGEPGVPGFKGEAGPKGEFGP
AGPQGAPGPAGEEGKRGPRGEPGAAGPNGPPGERGAPGNRGFPGQDGLAGPKGAPGERGA
PGVHGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGAPGAPGEDGRPGPPGPQGT
RGQPGVMGFPGPKGATGEAGKAGEKGLLGAPGLRGLPGKDGETGAQGPPGPSGLAGERGE
QGPPGPPGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGLTGPRGERGFPGERGAPGSQGL
QGPRGLPGAPGADGPKGAGGAPGPNGAQGPPGLQGMPGERGTAGIPGPKGDRGDNGEKGP
EGAPGKDGGRGLTGPIGPPGPAGPNGEKGEAGPRGPTGAAGSRGAPGERGETGPPGPSGF
AGPPGSDGQAGPKGEPGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGA
TGFPGAAGRVGPPGPNGNPGPVGPPGAPGKDGPKGLRGDPGQAGRAGDPGLQGPAGAPGE
KGEPGEDGPPGPDGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGD
RGPPGPVGPPGLTGPSGEPGREGNPGADGPPGRDGAAGMKGDRGQTGLVGAPGAPGAPGA
PGPVGPTGKQGNRGEPGAQGPMGPSGPAGARGMPGPQGPRGDKGEAGETGERGQKGHRGF
TGLQGLPGPPGPAGDQGAVGAPGPAGPRGPPGPVGPSGKDGANGLTGPIGPPGPRGRSGE
TGPAGPPGNAGPPGPPGPPGPGIDMSAFAGLAQPEKAPDPLRYFRADQAAPFLRQHDAEV
DATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHSDWKSGDYWIDPNQGCTLDAIKVFC
NMETGETCVYPNPTSIPRKNWWTSKGKDKKHVWFGETMNGGFHFSYGDGSLTANTAAIQM
TFLRLLSTEASQNITYHCKNSIAYMDRASGNLKKALLLQGSNDIEIRAEGNSRFTYTVLE
DGCTKHTGKWGKTVIEYRSQKTTRLPIVDVAPLDIGGSDQEFGVDIGSVCFL
NT seq
4479 nt
NT seq
+upstream
nt +downstream
nt
atgttcaggtttgtggatacccggactttggtgttgctcgcagcaacgcaagccatccta
ctagctgttgtcaaatgtcaaggcacagatattcaggacctgaaagtgatctgtaagcaa
gacgggcagaagtacagtgacaaggatgtttggaaaccggagccttgtagaatctgtgtc
tgtgacgctgggattattctttgcgacgagataatctgcgaagaccttaaagattgccct
aatcctgagattcctttcggagaatgctgccctgtctgtctgaacgaccgagctgccccc
atcgatcggcagagaggtcccaagggacaaaaaggtgaaccaggggacattaaagatgtt
gtaggaccaagaggacctccaggcccacagggaccatctggagagcaaggcccaagggga
ccacgtggagagaagggtgaagctggtgtgcctggtccccgcggtagagatggagaacct
ggaacccctggaaatcctggcccacccggaccacccggatcatcaggaatgtcagacttt
ggcggaaactttgcttcccagatggcacgaggattcgatgagaaggcaggaggtgctcag
atgggtgtcatgcaaggaccaatgggccccatgggacccagaggacctccaggacctaca
ggcgctcccggacctcaaggtttccaaggatcacccggagaacccggcgaatctggtgct
gctggtcccatgggtccccgcggccctcctggccctcctggtaaacctggcgatgatggc
gaggctggaaaacccggaaaagcaggagaacgtggacccccagggccacagggtgctcgt
ggcttcccaggaactccaggacttccaggtgtcaaaggtcacaggggttacccaggtctt
gatggtgccaaaggtgaagctggtgctgcaggcgtaaagggtgaagcaggtgcagctgga
gagaatggcgctcctggtccactgggtccacgtggtctgcctggtgagaggggtcgtccc
ggacctcctggttcagccggagcccgcggaaatgatggtctacctggtccagctggtcct
cctggtccggtcggtccagctggtgctcccggtttcccaggcgctccaggctcgaaggga
gaagctggtccaactggtgctcgtggccccgagggcgctcagggatcaagaggagagtcc
ggaagccctggatccccaggccctgctggagctccgggtaaccctggtactgatggaatt
cctggagctaaaggttctgctggcgctcctggcattgctggtgctcctggtttccctggg
ccacgtggtcccccaggcccacaaggtgcgactggccccctcggtcctaaaggtcaacag
ggtgaacccggtgtcccaggattcaagggagaagcaggcccgaaaggagaatttggtcca
gctggtcctcaaggcgctcccggcccggctggtgaagaaggcaagagagggcctcgtggt
gaacctggtgctgctggcccgaacggtccccctggtgaaagaggtgctcctggtaaccgt
ggtttcccaggtcaggatggtcttgctggtcctaagggtgcccctggcgagcgtggcgct
cctggagttcatggtcctaaaggagctaatggtgatcctggccgccctggtgagcctggc
ctgccgggtgcaagaggtcttactggtcgccctggagatgctggtccccaagggaaagtc
ggagcccctggtgcccctggtgaagatggccgccctggcccacctggtccacagggtact
aggggacagcctggtgtcatgggtttccctggtccaaaaggtgcaacgggtgaggctggc
aaggctggtgagaagggtctccttggcgctcctgggttgaggggtttgcctggcaaagat
ggcgagacgggcgctcagggtcctcctggtccttcaggacttgctggtgagagaggtgaa
caaggtcctcctggtcccccaggcttccagggtctaccaggtcccccaggtcctcccggt
gaaggtggcaagccaggagatcagggcgttcctggcgaggcaggagctgcaggtctgaca
ggtccacgaggtgaacgtggtttcccaggtgagcgcggagccccaggctctcagggattg
caaggtcctcgtggtctcccaggtgctccaggtgctgatggccctaagggtgcaggtggt
gctcctggtcccaacggcgctcaaggtcccccaggtctccagggtatgccaggcgagcgg
ggtacagctggaattcctggtccaaagggcgataggggtgacaatggcgaaaaaggccca
gagggcgcacccggaaaagatggcggtcgaggcttaactggtccaattggtcccccaggc
cctgctggtcccaacggagagaagggtgaagctggccctcgtggtcctacaggtgctgct
gggtctcgtggtgcccctggtgagcgtggtgagacaggtccccctggtccctctggcttt
gctggtcctcctggttcagatggtcaggcaggtcccaagggagagcctggtgaggctggg
cagaaaggtgatgcgggcgcccctggtccacagggtccatcaggtgctcccggtccacag
ggtccaacaggtgttactggacctaaaggtgctcgtggtgcccagggcccccctggtgca
actggattccctggtgctgctggtagggttggtccacctggtcctaatggtaacccaggc
ccagtgggtcctcctggtgctccaggtaaagatggtcctaaaggtctacgtggtgatcct
ggtcaagctggacgtgctggtgaccccggacttcaagggccagctggtgctcctggggag
aaaggtgaaccgggtgaagatggtccccctggtccagatggtccttcaggtccacaaggt
ttggctggtcagcgtggtattgtaggtctgcctggtcagcgcggagaaagaggtttccct
ggtctccctggtccttctggtgaacctggcaaacaaggagctcctggttctgctggagac
cgaggtccccctggcccagttggtccacctggtcttactggtccttctggtgaacctgga
cgtgagggcaaccctggcgctgacggtcctccaggtcgcgatggtgcagctggcatgaag
ggtgaccgaggtcaaactggacttgttggtgcccctggcgctcctggtgctccaggcgct
ccaggtcctgttggcccgactggcaagcaagggaatagaggcgaacctggtgctcaaggt
ccaatgggtccttctggtcctgctggggcccgtggtatgcctggtcctcaaggtcctcgc
ggcgacaagggtgaagctggtgagacaggtgaaagaggacagaaaggacacagaggcttc
actgggctgcaaggtttacctggtcctcctggtcccgctggtgatcaaggtgctgtagga
gctcctggccccgctggccctaggggacctcccggtcctgttgggccatctggtaaggat
ggtgcgaatggtctgactggtcccattggtccacctggcccacgcggtcgttctggtgaa
actggcccagctggtcctcctggaaatgccggcccgcctggtcctcctggtcctccaggc
cctggcatcgatatgtccgcctttgctggcctcgcacaacccgagaaagctcccgatcca
cttcgatacttccgggctgaccaggctgctccgttccttcgtcagcatgatgccgaggtt
gatgccactcttaagtctctcaacaaccagattgaaaatatccgcagcccagaaggaagc
aagaaaaacccagcccgtacctgccgggacctgaaactttgtcactcagactggaagagc
ggtgattactggatcgatcctaaccagggctgcacactcgatgccatcaaggtcttctgt
aacatggaaactggtgagacctgcgtctatcccaacccaacaagcattccacgtaagaac
tggtggacaagcaagggtaaagacaagaaacacgtatggtttggcgagactatgaatggc
ggtttccatttcagctatggtgatggtagtttgacagccaacactgctgccatccagatg
acgttcctgcgtctgctgtccaccgaggcctcccaaaacatcacctatcactgcaaaaat
agcattgcctacatggatagagcttctggtaatctgaagaaggcccttctattgcaaggc
tcaaacgatattgaaatcagagctgaaggaaacagccggttcacatacactgtcttggag
gatggctgcacgaaacatactggcaagtggggcaagacagtcattgaatacagatcacag
aaaacaacccgtttgcccattgtggatgttgcacctttggatattggcggctcagatcag
gaatttggtgttgacattggctcagtctgcttcttgtaa
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