Corynebacterium amycolatum: I6I65_01805
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Entry
I6I65_01805 CDS
T07354
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
camc
Corynebacterium amycolatum
Brite
KEGG Orthology (KO) [BR:
camc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
camc03019
]
I6I65_01805 (hrpA)
Enzymes [BR:
camc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
I6I65_01805 (hrpA)
Messenger RNA biogenesis [BR:
camc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
I6I65_01805 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
AAA_19
HA2_C
AAA_22
nSTAND3
AAA_30
ABC_tran
HA2_N
ResIII
NACHT
AAA_11
AAA_23
TsaE
T2SSE
PhoH
AAA_16
Zeta_toxin
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
QQU98137
LinkDB
All DBs
Position
complement(409519..413574)
Genome browser
AA seq
1351 aa
AA seq
DB search
MTTPSRSDKPVPRVQSGNHHSRHRNSARPQRSDKPAKDTRKKELYQLADQLPIREAQSFR
RRLKRASAPKALSAISADLDFALERLEDRRNAIPRITYPAQLPVSARRDDIAEAIENNQV
VIIAGETGSGKTTQIPKICLELGRGVRGKIGHTQPRRIAARSVAERIAHELGEKIGQHVG
YAVRFDDRVGKDTCIKLMTDGILLAEIGRDRLLREYDTIIIDEAHERSLNIDFLLGYLKH
ILPQRPDLKIIITSATIDPERFARHFAPDDEHTAPIIEVSGRTYPVEIRYRPLVRTVVAK
NGQEKEVAIEQIDGVIAACEELMRLGDGDILVFFSGEREIREAAEAIEGRRWKGVEAVPL
FGRLSNAEQHRIFTPHSGRRIVLATNIAETSLTVPGIEYVVDTGTARISRYSTRTKVQRL
PVEDISQASANQRSGRCGRVADGVAIRLYSEEEFLSRPEFTDPEILRTNLASVVLQMISL
RLGAIEAFPFVQPPEHKAVRDGINLLTELQAITTTSASGRGRESDSGASADAPELTDIGR
QIARIPVDPRLARMLVEGHENTTLGAVTVIVAALSLQDVRERPLEFQAQADQLHARFKDT
TSDFNSLLKLWEYLEEKRRELSGNQFRKMCKREYLHYLRVREWQDLVRQLHQATAELGWS
LSARSLTSGVDDPDEVAKSLLPGLLSMIGTREGEGKEFTGTRNTKFLIHPSSALAKKPPR
WVMAAEIVETSRTFARNVGTIQPQWVEKVAPHLLKHQYSEPHWSAKRGAAMAYQKSTLYG
VPVVVDRLVPYHRVDADAARSIFIRCALVDGEWNTHHEFFKNNQDKLAEAAKIEEKQRSR
GIVVDDDVLYAFYDSKLPASITTAANFDRWWKKTKPKQPNLLDFDPNKLLNPDAGDIDDN
AFPEMWQQGSVDFSLSYKFEPGAPDDGVTLRVPVPLLAGLREDGFDWQVPGLRAELAEAY
IRTLPKALRKSVVPAPDFARRALETMTPYSGRFVDVFADALRRLGGSGINGADFDPSKLP
AHLRFNYAVIDRHGNIVDQSRDLAPLRAKHAATVSTAVSKRAKSAAHEAVKKWTSDNLGT
VAETVKSTVDGQSVTMYPTLVTTKDGVAVEVKPTKAQAEATLATTNLTMLLRECPVNAAQ
MTKGLPLQQRVGVDAWPHGGADGLVEDCRVAVIRDCMIAAGGPVRSPEEFNKLLEQVRSG
VASEVRQLVVGIAQAMPAYVSVTNQLDKWEGDAIDDMRRQLEFMFPKGAVAKHGWQHLRH
LPRYLQAMEIRLEEMNRDPGRDADREDEVTEAREYLAVKLERLPKGRAHSAEVRDIQWLI
EELRVSLFAQRLGTAHSVSLTRIKKRVDKLR
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atgactactcctagccgttctgataaaccagttccacgtgtccagtcgggaaaccaccac
tcccgccatcgcaattccgccaggccgcagcgctctgacaagcctgctaaggacacgcgt
aaaaaggagctctaccagctcgctgatcaattacctattcgggaggcccagtccttccga
cgtcggctaaagcgagcatccgcgccgaaggcgctgtctgcaatctctgcagacctcgac
tttgcgctggagcggttagaagatcgtcgtaatgcgattcctcgcatcacctacccggcg
cagttgccggtgtccgcccgccgcgacgatattgcagaggcgattgagaacaatcaggtc
gtcattattgctggtgagactggctctggtaaaactacccaaatcccgaagatatgccta
gaactgggacgcggggtgcggggcaagattggccatacgcagccacgtcgtattgcggcg
cgttcggtggcggagcgaattgcccatgagctgggcgagaagattggacagcacgtcggt
tatgcggtgcgttttgatgaccgcgtgggcaaggatacctgcattaaactgatgaccgac
ggtatcctgctggccgaaattggccgcgaccgactgttgcgtgagtacgacaccatcatc
atcgatgaggcgcacgaacgcagcctcaacatcgacttcctgctgggatatttaaagcat
attctgccgcagcgcccagatctgaagatcattatcacttcggcgacgattgatccggaa
cggttcgcccgtcatttcgcgcctgacgacgagcacactgcgcccatcatcgaggtgtca
gggcgcacctacccggtggaaatccgctatcgccctctggtgcggactgttgttgcgaaa
aatgggcaagaaaaggaagtcgccatcgagcagatcgatggtgttatcgctgcgtgcgag
gagctcatgcggcttggcgacggcgatatcctggtgttcttttcgggtgagcgcgagatc
cgagaagcagccgaagccatcgagggcaggcgctggaagggtgtagaagccgttccactg
ttcggtcggctatctaatgcagagcagcaccgaatcttcaccccgcactccgggcgccgc
attgtgctggcgaccaatatcgcggagacgtcgctgacggtgccgggtattgagtacgtc
gtcgatactggtaccgcacgcatttcccggtactccacccgcacgaaggtgcagcgcctg
ccagtcgaggacatcagccaggcatccgcgaatcagcgctctggacgctgtggtcgtgta
gctgatggcgtggcgattcgtctctacagcgaggaggaatttctctctcgccccgagttt
acggatccggagattctgcgcaccaatctcgcttcggttgtactgcaaatgatttcgttg
cggcttggcgcgattgaggccttcccctttgtccagccaccagagcacaaggcagtgcgc
gatggcattaacctgctcacagagcttcaggctattaccaccacgtcggcgtctgggaga
ggccgtgaatctgactccggcgccagtgccgacgcccccgagctgacggacatcggccga
cagattgcccgtatacctgtcgacccgcgccttgcccgcatgctggtcgaagggcacgaa
aacaccactcttggggctgtgaccgtcattgtcgccgcgttgtctttgcaggatgttcgc
gaacgtccgctggagttccaagctcaggcagatcagctacatgcccgttttaaggacacc
accagcgacttcaactccctgctgaagctctgggaatacctggaggaaaagcgccgcgag
cttagcggtaaccagttccgcaagatgtgcaaacgcgagtacctccactatctgcgcgtt
cgcgagtggcaggacttggtgcgtcagctccaccaggcaacggctgagctgggctggagt
ctttcggcccgcagcttaaccagcggtgtcgacgatcccgacgaggtggcaaagtcgctg
ttaccgggtctgttatcgatgattggtacgcgcgagggcgagggcaaggaatttactggc
acccgaaacacgaagttcctcattcacccctcgtccgcgctggcgaagaagccaccccgc
tgggtgatggctgcggagatcgtcgagacttctcgaactttcgctcgaaacgttggcacc
attcagcctcaatgggtcgaaaaggtggctcctcacctgctgaaacatcagtactcggaa
ccgcactggtcggctaaacgcggtgcggctatggcttaccagaagtcgacgctctacggc
gtgcccgtagtcgttgaccgactggtgccttatcaccgtgttgatgcggatgccgcacgc
tctattttcatccgctgcgcacttgtcgacggcgagtggaacactcatcatgagttcttc
aagaacaaccaagacaagctggccgaagctgcgaagatcgaggaaaagcagcggtcccgc
gggattgtcgtcgacgacgatgttctttacgcgttctacgactccaagttgcctgcttcc
attaccactgcagccaattttgaccgctggtggaaaaagaccaaacccaagcagccgaat
ctcctcgatttcgatccgaacaagctgctcaatccggatgccggcgatatcgatgacaat
gccttccccgaaatgtggcagcagggctccgtcgatttctcgctgtcctataagttcgaa
ccgggagctcctgatgacggcgtaacccttcgcgtcccggttcctctcctggcgggtctg
cgtgaagatggcttcgactggcaggttcccggtctgcgcgccgagctcgcagaagcctat
attcgcactctcccgaaggctctgcgtaagtcagttgtccccgcgccggatttcgcacgc
cgcgcgctggagacaatgacgccgtattcagggcgcttcgttgatgttttcgccgatgct
ttacgacggctcggaggctccggcatcaatggagccgattttgacccgtccaagctgcca
gcgcacctgcgctttaactatgcggttatcgaccgacacggcaatattgtcgatcagagc
cgtgatctcgcccccttgcgcgctaagcacgcggcaactgtctcgactgccgtttcgaag
cgtgcaaagtctgcagcccacgaagccgtgaaaaaatggacttcggacaatctcggcact
gtggcagagacagtcaaaagtactgtcgacggtcaatcggtcaccatgtatccgacgctt
gtgaccactaaggatggcgtggccgtcgaagtcaaaccaactaaggcccaggccgaggcc
acattggcaactaccaacctgactatgttgttgcgcgaatgccccgtcaacgctgcacaa
atgactaagggacttccacttcagcaacgcgttggtgtggatgcgtggccgcatggcggc
gcagatggactcgtcgaagactgccgcgtcgcagtaatccgcgattgcatgatagctgct
ggtggcccggtacgatcccccgaagaattcaacaagctacttgaacaggttcgctccggt
gtcgcctcggaggtacgccagttggttgtcggcattgcacaggccatgccggcctatgtc
tcggtgactaatcagctggataagtgggaaggcgatgctattgacgatatgcgtcgccag
ctggagttcatgttccccaagggagcggtggccaagcacggatggcagcacctgcgtcat
ttgccacgctatctacaagcgatggagattcgccttgaggaaatgaaccgcgatcccggc
cgtgatgcggaccgtgaagatgaggttactgaggctcgtgaatatttagctgtgaaactc
gagcggctgcccaaggggcgagcgcattctgcggaagttcgggatattcagtggcttatc
gaagagctacgcgtcagcctctttgcccagcgtttgggaacagcccacagtgtttccctg
acccgaataaaaaaacgtgtggataagctgcgctaa
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