Corynebacterium amycolatum: I6I65_09190
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Entry
I6I65_09190 CDS
T07354
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
camc
Corynebacterium amycolatum
Pathway
camc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
camc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I6I65_09190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
camc03021
]
I6I65_09190
03400 DNA repair and recombination proteins [BR:
camc03400
]
I6I65_09190
Enzymes [BR:
camc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I6I65_09190
Transcription machinery [BR:
camc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I6I65_09190
DNA repair and recombination proteins [BR:
camc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I6I65_09190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QQU97513
LinkDB
All DBs
Position
2098740..2102711
Genome browser
AA seq
1323 aa
AA seq
DB search
MLDVNNFDELRIGLATADDIRRWSRGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRFKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAANIITSVDEEARHNDQETLEADMLVDKKLVEDDRDQELAERAQTLEED
LAELEAAGAKADARKKVQSAAEREMRHIRERAQRELDRLDEIWNTFIKLEPKQMIIDEGI
YTELVDRYEDYFTGGMGAEAIQTLIRNFDLAKEAEELREIIRDGKGQKKMRALKRLKVVT
AFLQSGNDPAAMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKLMALELFKPFVMKELVAKSYAQNIKSAKRMVERQR
PEVWDVLEDVITGHPVLLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLSSNNILSPASGKPLAMPRLDMVTGLYFLTLEKPELPGGHQ
DATEDAPEQGIYTSPAEAIMAYDRGAIGLQSPIKVRISHLRPPAEIESEQFPDGWNKGDT
WLASTTLGRVMFNDLLPWNYPYVEGVMAKKPQAAIINDLAAKYPMITVAQTVDKLKDAGF
YWATRSGVTIAMSDVLVLPNKREILNGYEEKAATVEKKFRRGKLSAAERHESLVNLWKAA
TAEVGEKVEALYPDDNPIPMIVKSGAAGNMGQIWTLAGMKGMVTNPRGEYITRPIKTSFR
EGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTHDGVVVEI
GEDVLDATGNPTGEIRRAKYVETAAIARVLAADVTDAEGNVLIEADTDLNDDHITLALSH
GVKEVKVRSVLTCSTATGVCAKCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTF
HQGGVGGDITGGLPRVQELFEARVPKNKAPLVRENGRVRLEEDEHFYTLTLIPDANSEDE
VVYDKLSKRQGLAEITVDGRRRAIRDGDHVVKGQQLLKGAADPHEVLEVLGRRGVQRHLI
EEVQSVYRDQGVAIHDKHIEVIVSQMLRRVIVSKPGDSDLLPGALVERSTVMAKNREIVA
SGGSVIEGRRVLMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENVIIG
KLIPAGTGISRYRNITVEPTEEAARQAAAPFASFGEGFYGAEDTYGIDQVGSAVPLDDIG
TFE
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacaactttgacgagctccggattgggctcgctaccgccgacgacatc
cgccgctggtctcgcggtgaggtcaagaagcccgagacgattaactaccgtacgctgaag
ccggaaaaggatggccttttctgtgagcgtatcttcggcccgacccgtgactgggagtgt
gcttgtggtaagtacaagcgcgttcgcttcaagggcatcatctgtgaacgctgtggcgtt
gaggtgaccaagtcgaaggttcgccgtgagcgcatgggccacattgagctggccgctccg
gtcactcacatctggtacttcaagggtgtgccgtcccgcctcggctacctgctcgacctg
gctccgaaggatctggaaaagatcatctacttcgctgccaacatcatcacctccgtggat
gaagaggctcgccacaacgaccaggaaaccctcgaagcagacatgctcgtggacaagaag
ctggttgaggacgatcgtgaccaggagctggccgagcgtgcccagaccctggaagaggat
ctggctgaactcgaggcagcgggtgccaaggctgatgcccgtaagaaggttcagtccgca
gccgagcgcgagatgcgccacatccgtgagcgcgcccagcgcgagctggatcgtctcgac
gagatttggaacaccttcatcaagctcgagccgaagcagatgattatcgacgagggtatt
tacaccgaactcgtcgaccgctacgaggattacttcaccggtggtatgggtgctgaggct
attcagaccctgatccgcaacttcgacctggccaaggaggccgaggagctgcgcgagatt
attcgcgacggcaagggacagaagaagatgcgcgccctcaagcgcctgaaggttgtcact
gcattcctgcagtccggcaacgacccggccgctatggtgctcgactgcattccggtgatt
ccgccggagctgcgcccgatggtgcagctcgacggtggccgctttgcgacctcggacttg
aacgacctctaccgtcgtgtcatcaaccgaaacaaccgcctgaagcgcatgattgacctg
ggcgctccggaaatcatcgtcaacaacgagaagcgcatgcttcaggaatccgttgacgca
ctgtttgacaacggacgtcgtggccgcccggtcactggtccgggtaaccgcccgctgaag
tccctgagcgacctgctcaagggcaagcagggtcgtttccgtcagaacctgctgggtaag
cgtgttgactactccggccgttcggttattatcgtcggcccgcagctgaagctgcaccag
tgtggtctgccgaagctgatggctcttgagctgttcaagccgttcgttatgaaggagctc
gtggccaagagctacgcgcagaacatcaagagcgcgaagcgcatggttgagcgtcagcgc
ccagaggtgtgggacgtcctcgaagatgtcattaccggacacccggtcctgctgaaccgt
gcacctacgctgcaccgcctgggtattcaggcgttcgagccggtcctggttgagggtaag
gcaattcagctgcacccactggcatgtgaggctttcaacgccgacttcgacggtgaccag
atggcagttcacctgccgctgtccgctgaagcacaggccgaggctcgcgtcctgatgctg
tcctcgaacaacattctgtcgccggcttccggtaagccgctggctatgccgcgtctggat
atggtcactggcctgtacttcctgacactggagaagccggagctgccgggtggccaccag
gatgccaccgaggacgcaccggagcagggtatttacaccagcccggccgaggccatcatg
gcttacgaccgcggtgcaattggcctgcagagcccaattaaggttcgcatcagccacctg
cgtccgccggccgagattgagtccgagcagtttccagatggttggaacaagggcgatacc
tggctggcttccaccacgctgggccgcgttatgttcaacgacctgctgccgtggaactac
ccatacgtcgaaggcgttatggctaagaagccgcaggctgcgatcatcaacgacttggct
gccaagtacccgatgattacggtcgctcagaccgtcgacaagctcaaggatgctggtttc
tactgggctacccgttctggtgtcaccattgctatgtctgacgtgctggttctcccgaac
aagcgtgagatcctgaacggctacgaagagaaggccgccacggtggagaagaagttccgc
cgcggtaagctctcggccgctgagcgtcacgagtcgctggttaacctgtggaaggctgcg
acggctgaggtcggtgaaaaggtcgaggctctgtacccggatgacaacccgattccgatg
atcgtgaagtcgggtgctgccggtaacatgggccagatctggacgctggccggcatgaag
ggcatggttacgaacccgcgtggtgaatacatcacccgcccgattaagacctccttccgc
gaaggcctgtcggttctcgagtacttcaacaactcgcacggttcccgtaagggtctggcc
gataccgcgcttcgtaccgctgactcgggttacctgacccgtcgtctggtcgacgttgca
caggacgtcatcgttcgcgaagaggactgtggcacccacgacggtgtcgttgtcgagatt
ggcgaggatgttctggacgcaaccggcaacccgaccggcgagatccgtcgtgcgaagtac
gtcgagaccgccgcgattgctcgcgtactggcagcagatgtcaccgacgctgagggcaat
gtccttatcgaggctgacaccgacctgaacgacgaccacatcaccctggctctcagccac
ggtgtcaaggaagtcaaggtccgctcggttctgacctgttccaccgcaaccggtgtctgt
gccaagtgctacggtcgttcgatggcaaccggcaagctggtcgacatcggagaggctgtc
ggtattgtcgctgcgcagtccattggtgagccgggtacccagctgaccatgcgtacgttc
caccagggtggtgtcggtggcgacattaccggtggtctgccgcgtgtccaggagctgttc
gaggcccgagtgccgaagaacaaggctccactggttcgcgaaaacggtcgcgtgcgcctg
gaggaggacgagcacttctacacgctcaccctcatcccggatgccaacagcgaggacgag
gtcgtctacgacaagctgtccaagcgtcagggtctggctgaaatcaccgtcgatggccgt
cgtcgcgccatccgcgatggtgaccatgtggttaaggggcagcagctgctcaagggcgct
gccgatccgcacgaggtcctcgaggtcctggggcgccgcggtgtccagcgtcacctcatt
gaggaagtccagtcggtctaccgtgaccagggtgtggccattcacgacaagcacatcgag
gttattgtcagccagatgctgcgccgcgtgattgtgtccaagccgggtgactccgacctg
ctgccaggcgcattggtcgagcgctccacggtcatggctaagaaccgcgagattgttgcc
tccggcggcagcgtcatcgagggccgtcgcgtgctgatgggtattaccaaggcatcgctg
gccaccgagtcctggctgtccgcggcctccttccaggagacgacgcgcgtgcttaccgac
gccgctatcaacaagcgctcggataagctcatcggcctgaaggagaacgtgatcatcggt
aagctaatcccggctggtacgggtatctcgcgctaccgcaacatcactgttgagccgact
gaggaagctgcccgccaggcagccgcaccatttgcctccttcggtgagggcttctacggt
gccgaggacacctacggcatcgaccaggttggttccgcagttccgctggatgacatcgga
accttcgagtaa
DBGET
integrated database retrieval system
