Corynebacterium amycolatum: I6I65_10900
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Entry
I6I65_10900 CDS
T07354
Name
(GenBank) translation initiation factor IF-2 N-terminal domain-containing protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
camc
Corynebacterium amycolatum
Pathway
camc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
camc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6I65_10900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
camc03019
]
I6I65_10900
03009 Ribosome biogenesis [BR:
camc03009
]
I6I65_10900
Enzymes [BR:
camc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
I6I65_10900
Messenger RNA biogenesis [BR:
camc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I6I65_10900
Ribosome biogenesis [BR:
camc03009
]
Prokaryotic type
rRNA processing factors
I6I65_10900
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
Motif
Other DBs
NCBI-ProteinID:
QQU97817
LinkDB
All DBs
Position
2468187..2472260
Genome browser
AA seq
1357 aa
AA seq
DB search
MANFSQDVVAKAREFDRESAALKTRVHHLAKSLGLTSKETIEALGHAGIVVKSAASTINQ
NQLDAVLNFIGDHPEGASLNDGSAATKQTGEESAAKEKQSAGKPNAADEKSDEQTAAKSE
KKSAAKKSSKKSAAKKATKKADQKDAPKAEKKADQKAAQSEAESDAAPAEEVTEKKDAKK
ASAKKSSAKQSAEKQTEEKQSDEKKSTTKKRATRKRAVKKTAGAPEETATKDEQKDSNSV
VEEAVEAVVQSSSKKAADKNTADTVAETAEKTSAEKASAEAPAAKSAAVTTRRGRRVRRA
VRTTSAPVAEGTRETQEAQGPQDTQATQGEALQDIEPPIVPEPPVAEEQTAFAPIFLAPQ
AVPATAKNSATEDAASADSGASNQDSDDNAGEGQDGSSSSETERQPRPRRRRRGRGRRND
DAQQAEKTTENAEREEAETREEVEEPQAIKGSTRLEAQRRRRIERREESRKRHVISEAEF
LARRESVERTMVVRERKRHDHAGIVTEVGVLEDDLLVEHFVTSDTQTTQIGNIYLGRVQN
VLPSMEAAFIDIGTDRNGVIYVGDLNWKLLGTKSRSRKIEHALKAGDQILVQVSKDPIGH
KGARLTTHISMAGRFLVYVPGGRSAGISRKLPEPERKRLKSILSEVTPEGSGTIIRTAAE
GVSKEAIEADIKRLESQWQEIWEASEAAKAKRGAKPIALYEEPDMLVKVVRDVFNEDFSR
LVVEGDRPWNTVTDYIGDLAPELEPRLQRYFAKEHGDADVFEHFRIDEQLAKALDRKVWL
PSGGTLVIDRTEAMTVIDVNTGKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIV
VDFIDMVLPENQDLVLRRLKEALGRDRSRHEVSEVTSLGLVQMTRKRLGTGLLETFSTPC
SCCNGRGLIIHIDPVEQDNQSRGHKNGRRNEEQGKSKRRNKSRSEHNPANHPAALAMHRD
QGDQAGTSKTTLDDDTETNQRDKEAADKRVAAAVEAVIVSSGNDEPKPPRRRRVRKSQGR
NDEQRQDGNGRQERRERDEQSDNSNDLAALAAAAVAEAREKDPEEPSDDRYMPQEGQRRR
RRATRRRVAEHVAVDSAARDADDRDEEHGDRRKRSERPTRAERAERTDNGGTGGGRGDAE
RSSSASARRRRRRAVRRTAVNETTAPQAESQAASTTDVREPAEDDKGGNANKTAKAVATE
SQTYEEAKEAFERSPRRRRPTRGNSRSDRAPRREDFEPTKPKADAEGSKGGDRAKDNHDD
SNRSANRSGGGRRSGKSRVEVVAVQGTGARRNRRRAVRRVSSQSDAGATAPKQRQGTSNR
ATKPEQKQANRGAAATQKKPANRRRRVRRAVRRSGRN
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaatttcagccaggatgttgtcgctaaggcacgcgaattcgatcgcgagtcagcg
gctctgaaaacccgagtccaccacctggccaagagtctggggttgacctcgaaggaaacc
atcgaagcactggggcacgcggggattgtcgtaaagtccgctgcgtccaccattaatcaa
aatcagctcgacgcggtgctgaatttcatcggcgatcatccagagggtgcctcgcttaac
gacggatccgctgcgaccaagcaaaccggcgaagagtcggccgcgaaggaaaaacagtcg
gcaggtaagccgaacgcggcggatgagaagtcggacgagcaaaccgcagctaagtccgag
aagaaatcagctgctaagaagagcagcaagaagtcggctgcgaagaaggccacaaagaag
gccgaccagaaggatgcgccgaaggcagaaaagaaggccgaccagaaggcagctcagagc
gaagcggagtcggacgcagcgcctgctgaggaagtgaccgagaagaaggacgccaagaag
gcctcggctaaaaaatcctcggcaaagcagagcgcagagaagcagactgaagagaagcag
agcgacgagaagaagagcacgactaagaagcgggcaacgcgtaagcgggctgtgaagaag
accgctggagctccggaagaaaccgcaacgaaggacgagcagaaggactcgaactcggtc
gtcgaggaagcggttgaggctgtagttcagtcgtcatcgaagaaggctgcagataagaat
actgccgacaccgtagccgagaccgctgagaaaacttccgctgagaaagcgtccgccgaa
gcacctgctgcaaagagcgctgcagtgaccacacgtcgtggtcgccgagttcgccgtgcg
gtccgcacgaccagcgctccagtggcagaggggactcgggaaactcaggaagcgcaagga
ccgcaggatacacaggcaactcagggcgaagccctgcaggacatcgagccgccgatagtc
ccggagccgccggttgcggaagagcagaccgcgtttgcgcctatcttcctggctccgcag
gctgtgccggccacggccaagaattcggccaccgaggatgcagcttcggctgacagcggt
gcctccaaccaggattccgatgacaacgcgggggaggggcaggacggctcgtcgtcaagc
gaaacggagcgtcagccgcggccgcgccgtcgccgtcgtggacgtgggcgtcgtaatgat
gatgctcagcaggcggagaagaccaccgaaaacgcagagcgcgaggaggcggaaacccgc
gaggaggtcgaagagccacaggcgattaagggctcgactcgcctggaggcgcagcgccgt
cgccgtatcgaacgtcgtgaggaatcgcgcaagcgccacgtgatctcggaggctgagttc
ctggctcgccgtgagtcggtggagcgcacgatggtggtgcgtgagcgcaagcgccatgac
cacgcgggcattgtcactgaggtgggtgtgctggaagatgacctgttggtcgagcacttc
gttacctctgacacgcagaccacgcagatcggcaatatctacctcggtcgcgtgcagaac
gtcctacccagcatggaagcggcgttcattgatatcggaaccgaccgcaacggtgtcatt
tacgtaggtgacctgaactggaagctgctgggcacgaaatcgcgttcgcgcaagattgaa
cacgcgctgaaggccggcgaccagattctggtccaggtgtccaaggatccgattggtcac
aagggcgcgcgtctgaccactcacatttcgatggctggtcgattcctggtgtacgtgccg
ggcggccgaagcgcgggtatttcccgcaagctgccggagccagagcgcaagcgcctgaag
tcgattctgagtgaggttacgccggagggctcgggcacgattattcgcaccgcggccgag
ggcgtgtccaaggaggccatcgaggccgacattaagcgcctggaatcgcagtggcaggaa
atctgggaagcctccgaggcggcgaaggcgaagcgcggggcaaagccgattgcgctgtac
gaagagccggacatgctggtcaaggtcgtccgcgacgtcttcaacgaggacttctcgcgt
cttgtggtggagggcgaccgtccgtggaacacagtgacggactacatcggcgacctggca
ccggagcttgagccgcgtctgcagcgctacttcgccaaggagcacggcgacgctgacgtc
ttcgagcacttccgcatcgatgagcagctggccaaggcactcgaccgcaaggtctggctg
ccttcgggcggcacgctggtcatcgaccgcaccgaggccatgacggtcatcgacgtcaac
accggtaagttcaccggtgctggcggaaacctggaagagacggtcactcgcaacaacctg
gaggccgctgaggaaatcgtccgccagatgcgtctgcgcgatctgggcggcatgattgtc
gtcgacttcatcgacatggtgctgccggagaaccaggacttggtgctgcgccgtctgaag
gaggcgctcggccgcgaccgctcgcgtcacgaggtctccgaggtcacctcgctcggcctc
gtccagatgacgcgcaagcgtctgggcacaggcctgctggagaccttctccacgccgtgt
agctgctgtaatggccgtggtctgattatccacatcgacccggtcgagcaggacaatcag
agccgtggtcacaagaacggtcgccgcaacgaagagcagggtaagtccaagcgccgcaac
aagtcgcgctcggagcacaatccggccaaccacccggcggcgctggccatgcaccgcgat
cagggcgaccaggcaggcacttccaagacaacgcttgacgacgacacggaaaccaaccag
cgcgataaggaggcagccgacaagcgagttgcagctgctgtcgaagctgtcatcgtctct
tctgggaacgatgagccgaagccaccgcgtcgtcgccgggttcgtaagagccagggccga
aacgatgagcagcgacaggacggcaatggccgtcaggagcgccgcgagcgtgatgagcaa
tcggacaactccaatgatctggctgctctggctgccgcagctgttgcggaagcccgtgag
aaggatccggaagagccatcggatgaccgttacatgccgcaggagggacagcgccgccgc
cgtcgggctacgcgtcgccgggtagcggagcatgtcgccgttgattcggctgcacgcgac
gctgatgaccgcgacgaagaacatggcgatcgccgcaagcgttcggagcgcccgactcgt
gctgagcgtgccgagcgtaccgataacggtggcaccggtggaggccgtggcgacgctgaa
cgctccagcagcgccagtgctcgacgtcgccgtcgtcgcgctgttcgccgtacggctgtg
aatgagaccactgcgcctcaggccgagtcccaggcagcttccaccacagatgtgcgggag
ccagccgaggatgacaagggcggcaacgctaacaagaccgccaaggctgtggccacggag
tcccagacctatgaggaggccaaggaggcgttcgagcgttccccacgtcgtcgtcgtccg
actcgcggtaactcccgctcggatcgcgcaccgcgtcgcgaggacttcgagcccactaag
ccaaaggcggacgctgaaggcagcaagggcggagatcgtgcaaaagacaaccacgatgac
agcaaccgcagcgccaaccgcagtggcggtggccgtcgctcgggcaagtcgcgggttgaa
gtggtagcggtccagggcacgggagctcgccgtaatcgccgtcgggcggtgcgcagggtc
tcgtcgcaaagcgatgctggagcgactgcgccgaagcagcgacagggcacttcaaaccgc
gccactaagccagagcagaagcaggctaatcgcggtgctgcggcgacgcagaagaaaccg
gccaatcgtcgccgccgagtgcgtcgtgcggtgcgccgaagcggccggaactaa
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