Corynebacterium ammoniagenes: CAMM_08360
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Entry
CAMM_08360 CDS
T05164
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
camg
Corynebacterium ammoniagenes
Pathway
camg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
camg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAMM_08360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
camg03019
]
CAMM_08360
03009 Ribosome biogenesis [BR:
camg03009
]
CAMM_08360
Enzymes [BR:
camg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CAMM_08360
Messenger RNA biogenesis [BR:
camg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CAMM_08360
Ribosome biogenesis [BR:
camg03009
]
Prokaryotic type
rRNA helicases
CAMM_08360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
UvrA_inter
adh_short
AAA_22
Motif
Other DBs
NCBI-ProteinID:
APT82932
LinkDB
All DBs
Position
complement(1823633..1825609)
Genome browser
AA seq
658 aa
AA seq
DB search
MSITDNATGGEMEPEDNFNQSESQDKTQGDAVATAQVTGAADTSEDTGAEDKNSANDNPQ
GFGNLGLPDKVQDAVAKVGYTTPSPIQAQTIPILMEGRDVVGLAQTGTGKTAAFALPVLS
QIDVNARHPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRRGA
QIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILADTPEEKQVALF
SATMPNSIRRLSKKYLNSPAEVTVKSEQRTNDNIKQRFLLTAHRAKLDAFTRILEVTDYD
AMIVFCRTKHETEEVAEKLRDAGYNAAAINGDIAQNQRERTVDQLKDGRLDILVATDVAA
RGLDVDRITHVVNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNA
RLEEMELPTVDEVNAKRKENFASQITEVLGDGQMELFRGLVRKYSENNNVAMDDIAAALA
VKLQGGSDFLVKDMPAPKRDRRERDRFERDDRGGRGRDRGRRDRDDRGGRHERRNDGDFD
TYRLDVGKRQNVRPGAIVGAIANEGGLSAKDFGRITIAVGHTLVDLPKTMDPSVLDRLRD
TRISGQLINIKKDTGRPPRYSEDRGGRGGRGGRDFRGGDRDRSGRGDRDRGGRGRWRD
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgataacgccaccggcggcgaaatggagccggaagataactttaaccag
tcggaatctcaggataaaacgcaaggtgacgcagtagctactgcacaggtcaccggggct
gcggatacttctgaggacaccggcgctgaggataagaactcagccaacgataatccccag
gggttcggcaatttaggccttccagacaaagttcaggatgccgtagccaaggttggttac
acaaccccttccccaattcaagcccaaaccatcccaattttgatggaaggccgcgacgtt
gtcggcctcgcacaaactggtaccggtaagaccgcagctttcgcgctgccagtcttgtcg
cagattgatgtcaatgcccgccatccgcaggcattggtgctggctccaactcgtgagctc
gcgctgcaggtcgcagattctttccagtcatttgcagatcacttgggacgcattgaagtg
ctgccaatttatggtgggcaggcctatggcattcagctgtctggtctgcgccgtggcgca
caaatcatcgtgggtactcccggtcgtgtgattgaccacttggaaaagggttctctggat
atttcccagctgcgtttcctggtactcgacgaagcagatgaaatgttgaacatgggcttc
caggaagatgttgagcgaatcctcgctgacactccggaagaaaagcaggtcgcactgttc
tcggcaaccatgccaaacagtattcgtcgcctgtccaagaagtacttgaactcacctgca
gaggtgaccgtcaagtctgagcagcgcacgaatgacaacattaagcagcgcttcttgttg
accgcacaccgtgcaaagctggatgcctttactcgcatcttggaagtaacagattacgac
gcaatgatcgtgttctgccgcaccaagcatgagaccgaagaagttgcagaaaagctgcgc
gatgcaggttataacgctgccgccatcaacggcgacatcgcgcagaaccagcgtgagcgc
actgttgaccagctcaaagatggccgcttagacatcttggttgctactgacgtggcagct
cgtggtttggacgtcgaccgcatcactcacgtggttaacttcgacattccaaacgacacc
gagtcgtatgtccaccgcatcggccgtaccggtcgtgctggacgtaccggcgaagcaatc
ttgttcgttactcctcgcgagcgccgcatgctgcgctctatcgaacgcgttaccaatgcg
cgtttggaagagatggaactgcctaccgttgacgaagtcaacgcaaagcgcaaggaaaac
ttcgcttctcagatcaccgaggttctcggcgacggccaaatggaactcttccgtggcttg
gtacgtaagtactctgagaacaacaacgttgcgatggacgacatcgcagcagcgttggct
gtcaagctgcagggtggctctgacttcctagtcaaggacatgccggctcctaagcgtgac
cgtcgtgagcgcgaccgcttcgagcgtgatgatcgtggtggacgcggacgtgaccgtggc
cgtcgtgaccgtgatgatcgtggtggacgccatgagcgccgcaacgatggtgactttgat
acttaccgcttggacgttggtaagcgtcaaaatgtccgcccaggtgccattgttggcgca
atcgccaatgagggtggattgtctgcaaaggacttcggccgcatcactattgctgtcgga
cacactttggtggacctgccgaagacgatggatccttccgtcttggatcgcttgcgcgat
acccgcatctccggtcagttgatcaatatcaagaaggatactggtcgaccaccacgctat
tccgaagatcgtggtggacgcggtggccgtggaggccgtgacttccgcggtggcgaccgt
gaccgcagtggtcgtggcgaccgcgaccgtggtggccgtggacgctggcgcgactaa
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