Cobetia amphilecti: LCW13_00875
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Entry
LCW13_00875 CDS
T07922
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
camh
Cobetia amphilecti
Pathway
camh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
camh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCW13_00875 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
camh03019
]
LCW13_00875 (pnp)
03016 Transfer RNA biogenesis [BR:
camh03016
]
LCW13_00875 (pnp)
Enzymes [BR:
camh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LCW13_00875 (pnp)
Messenger RNA biogenesis [BR:
camh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LCW13_00875 (pnp)
Transfer RNA biogenesis [BR:
camh03016
]
Prokaryotic type
tRNA degradation factors
LCW13_00875 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
KH_2
Motif
Other DBs
NCBI-ProteinID:
UBU48881
LinkDB
All DBs
Position
193298..195439
Genome browser
AA seq
713 aa
AA seq
DB search
MNPVTHSFQYGNDTITLETGRIARQATGSVMVTMGNTSVLCTVVAKASPKSGQSFFPLSV
HYQEKAYAAGRIPGGFLKREGRPTEKETLTSRLIDRPMRPLFPEGFMNEVQVVCTVMSAE
RNVDPDIAALLGTSAALCISGVPFAGPVGAARVGFSEQRGYFLNPGYSELAHSELDMVVA
GTEKAVLMVESEAQELLEDEMLGAVLYGHHEMQKAITGIETFAAKVNRPKWAWVPQKLDR
VLVEALEQSFATQIGDAYRLSDKMARQDSLSALKAQAIDLLGAEDDARFSVEAVATAFAA
LEKRIVRQRVIAGEPRIDGRDTRTVRALDMAVGVLPKAHGSALFTRGETQAIATATLGTT
RDSQLIEGLSGEKQDRFMLHYNFPPYCVGETGFIGAPKRREIGHGRLARRGIESMLPSLQ
AFPYAIRVVSEITESNGSSSMASVCGASLALMDAGVPLKAPVAGIAMGLVKDANGVAILT
DILGDEDHLGDMDFKVAGTAEGVTALQMDIKIEGIDEEILEQALEQALEARLTILAQMNE
VLAASRQEVSDNAPAMLSLKIAPNKVRDVIGKGGSTIRKICEETGANVDLDDDGSVRIYA
EHKAQAQAAAKYVEGIIAEAEIGKLYAGKVARIADFGAFITFMPGTDGLLHISQIVEERV
NDVRDYLNEGDEVVVKVLDIDNRNRVKLSLKEISEEEKAAFAAAQAEEAAAQD
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaacgcacagcttccagtacggtaatgacaccatcaccctcgagaccggc
cgcatcgcgcgtcaggcgaccggtagcgtgatggtgaccatgggcaatacctcggtgttg
tgcaccgtggtggccaaggcgtcgccgaaatccggccagtccttcttcccgttgtcggtc
cactatcaggagaaggcctacgcggcggggcgcatccccggcggcttcctcaagcgcgaa
gggcgtcccaccgagaaggaaaccctgacctcacgcttgatcgaccgcccgatgcgcccg
ctgtttcccgaaggcttcatgaatgaggtgcaggtggtctgcacggtgatgtcggcggag
cgcaatgtcgacccggacatcgcggcactgctcggcacctctgcagcgctttgcatctcc
ggtgtacccttcgcgggccccgtgggcgcggcgcgcgtcggcttcagcgagcagcgcggc
tacttcctgaatcccggctacagcgaactggcgcattccgagctggacatggtggtggcg
gggaccgagaaggccgtgttgatggtcgagtccgaggcccaggagctgctggaagacgag
atgctcggcgccgtgctctatggccatcacgagatgcagaaggccatcacggggatcgag
acgttcgccgccaaggtcaatcgtcccaagtgggcgtgggtgccgcagaagctcgaccgc
gtgctggtcgaggcgctggagcagagcttcgccacccagatcggtgatgcctatcgcctg
agtgacaagatggcgcgtcaggacagtctgtcggcgctcaaggcgcaggccatcgacctg
ctgggcgccgaggatgatgcgcgcttcagcgtcgaggccgtcgccacggccttcgcggcg
ctcgagaagcgtatcgtgcgtcagcgcgtgatcgccggcgagccgcgtatcgatggtcgt
gatacgcgcaccgtgcgagcgctggacatggcggtgggcgtgttgcccaaggcgcatggt
tcggcgctgttcacccgcggcgagacccaggcgatcgccactgccaccctggggaccacg
cgcgactcacagctgatcgaagggctgtccggcgagaagcaggaccgcttcatgctgcac
tacaacttcccgccctactgcgttggcgagacaggcttcatcggcgcgcccaagcgacgt
gagatcggtcatgggcgtctggcgcgtcgtggcatcgaatccatgctgccgtcgctgcag
gccttcccctacgcgatccgtgtcgtctccgagatcaccgaatccaatggttcgagctcg
atggcgtccgtgtgtggcgcctcgcttgcgctgatggacgccggtgtgccgctcaaggcg
ccggtcgcgggtatcgccatggggctggtcaaggacgccaatggcgtcgcgatactgacc
gatatcctcggcgatgaggatcacctcggcgacatggacttcaaggtcgcggggaccgcc
gaaggcgttaccgcgctgcagatggacatcaagatcgaggggatcgacgaggagattctt
gagcaggcgctggaacaggccctcgaggcacgtctgaccatcctcgcgcagatgaatgag
gtgctggccgccagtcgccaggaagtctcggacaatgccccggcgatgctgtccctcaag
atcgcgcccaacaaggtgcgtgacgtgatcggcaagggcggctccaccatccgcaagatc
tgtgaagagactggcgccaatgtcgatctcgacgatgatggcagcgtgcgcatctatgcc
gagcacaaggcgcaggcgcaggcggctgccaagtacgtcgagggcatcattgccgaggcc
gagatcggcaagctctatgccggcaaggtggcgcgcatcgctgacttcggtgccttcatc
accttcatgccgggcactgatggtctgctgcacatctcgcagatcgtcgaggagcgggtc
aatgacgtacgcgactacctcaacgaaggcgatgaggtggtggtcaaggtgctcgacatc
gacaaccgcaatcgcgtcaagctgtcgctgaaagagatcagcgaagaagagaaggcggcc
tttgccgctgctcaggctgaagaggccgccgcccaggactga
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