Cobetia amphilecti: LCW13_01185
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Entry
LCW13_01185 CDS
T07922
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
camh
Cobetia amphilecti
Pathway
camh03030
DNA replication
camh03410
Base excision repair
camh03420
Nucleotide excision repair
camh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
camh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LCW13_01185 (polA)
03410 Base excision repair
LCW13_01185 (polA)
03420 Nucleotide excision repair
LCW13_01185 (polA)
03440 Homologous recombination
LCW13_01185 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
camh03032
]
LCW13_01185 (polA)
03400 DNA repair and recombination proteins [BR:
camh03400
]
LCW13_01185 (polA)
Enzymes [BR:
camh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LCW13_01185 (polA)
DNA replication proteins [BR:
camh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LCW13_01185 (polA)
DNA repair and recombination proteins [BR:
camh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LCW13_01185 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LCW13_01185 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
UBU48932
LinkDB
All DBs
Position
257914..260802
Genome browser
AA seq
962 aa
AA seq
DB search
MAATPIVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVINMLKSLIRQYPDSPMAVVFD
AKGKTFRDDMYPEYKAQRPPMPDDLRLQVEPLHACVRALGLPLLCVEGVEADDVIGTLAR
MATEAGRDAVISTGDKDMAQLVNEHITLVNTMKNETLDVDGVTEKFGIPPNLIIDFLALM
GDKVDNIPGVPGVGEKTALGLLQGMEGGLDTIYGDLDRIKTLSFRGAKTLAKKMEAHRED
AYLSYRLATIKLDCELEYGLDDLAIAAPDTAALVELYKEMEFRAWLKELLEGGDMAATPH
ADEKDSGVAGSDLFGDSIAPVAEKASGKGKTAAAPTPDLEAAEEGDEMPDALPPREERNY
RAITEQAELDAWLERVRNANSLCFDLETTSLNYMEAEIVGIGMALEVGEAVYIPVAHSYL
DAPAQLQRQAVLEALTPILADTAITKIGQNLKYDIEVLARYDIAVAGPLADTMLMSYVLN
STATRHDMDSLALKYLGESTISFTDIAGKGAKQLTFDQIALEEAMPYACEDVDITLRLAA
LLMPRIEKLGRLDEVLRQFEYPLIPVLARIERNGVAIDPERLHVQTRELTEQIHDIEKQA
FELAGREFNLSSPKQLGEILFEEQKLPVKKKTPKGAPSTAEAVLEELALDYPLPKLIMRH
RGMTKLKSTYTDKLPQLVNPTTRRLHTSYHQAVTATGRLSSSDPNLQNIPVRSDEGRRIR
QAFIARPGYRIVAADYSQIELRIMAHLSGDKGLLSAFADNRDVHAATAAEVFGTEEARVT
SDQRRSAKAINFGLIYGMSAWGLSRQLDIEPGQAKTYIERYFERYPGVATYMEDTRQLAA
EQGYVETIFGRRLYLPEIGSRNHARRSAAERTAINAPMQGSAADIIKRAMIDVDAWLAGS
DGVDRYDAMMVMQVHDELVFEVAEAQVDAFMKDVAQRMQNAASLDVPLLVEVEQGDNWEE
AH
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atggccgccacgccgatcgttctcgtcgatggatcttcctatctctatcgtgcctttcat
gctctgccgccgctgaccacctccaagggcctgcccaccggcgcggtgaagggcgtgatc
aacatgctcaagagcctgattcgccagtacccggacagccccatggcggtggtcttcgat
gccaagggcaagaccttccgcgacgacatgtacccggagtacaaggcccagcgcccgccg
atgccggatgacctgcgcctgcaggtcgagccgctgcatgcctgcgtgcgtgcccttggc
ctgcccctgctgtgcgtggaaggcgtcgaggccgatgacgtcatcggcaccctggcgcgc
atggcgaccgaggccgggcgtgacgccgtcatctccaccggcgacaaggacatggcccag
ctggtgaacgagcacatcaccctggtcaacaccatgaagaacgagacgctggacgtggac
ggcgtcaccgagaagttcggcattccgccgaacctgatcatcgatttcctcgcgctgatg
ggcgacaaggtcgacaacattcccggcgtgccgggcgtgggcgagaagaccgcgctgggc
ctgctgcaaggcatggaaggcggcctcgacaccatctacggcgatctcgatcgcatcaag
acgctcagcttccgtggcgccaagaccctggccaagaagatggaagcgcatcgcgaagat
gcctatctctcctaccgtctcgccaccatcaagctggactgcgagctggaatatggcctg
gatgacctcgcgatcgccgcgccggacaccgccgcgctggtcgagctctacaaggagatg
gaattccgcgcctggctgaaggagctgctggaaggcggtgacatggcggccacgccgcat
gccgatgagaaggacagcggagtcgccggcagtgacctgttcggtgacagcatcgcgccg
gtcgctgaaaaggcctcaggcaagggcaagaccgccgctgcgccaacgcctgatctggaa
gcggcggaagagggcgatgagatgcccgatgcgctgccgccgcgtgaggagcgcaactac
cgcgccatcaccgagcaggccgagctggatgcgtggctcgagcgcgtgcgcaacgccaac
tcgctgtgcttcgatctcgagaccaccagcctcaactacatggaagccgagatcgtcggt
atcggcatggcgctggaagtcggcgaggccgtctacattcccgtcgctcacagctatctg
gatgcccccgcgcagctgcagcgccaggccgtgctggaagcgctgacgccgattctcgcc
gataccgccatcaccaagatcggccagaacctcaagtacgacatcgaggtgctggcgcgc
tatgacatcgcggtggccggcccgctggccgacaccatgctgatgtcctacgtgctcaat
tccaccgcgacccgtcacgacatggactcgctggcgctcaagtatctgggcgagagcacc
atcagcttcaccgacatcgccggcaagggcgccaagcagctgacgtttgatcagatcgcg
ctggaagaggcgatgccgtatgcctgcgaggatgtcgacatcaccctgcgcctcgccgcg
ctgctgatgccgcgcatcgagaagctgggacgtctggatgaagtgctgcgtcagttcgaa
tatccgctgattccggtgttggcacgcatcgagcgcaacggcgtcgcgatcgaccccgag
cgcctgcacgtccagacccgcgagctgaccgagcagatccacgacatcgagaagcaggcc
ttcgagcttgcgggccgcgaattcaacctctcttcgcccaagcagctgggcgagatcctc
ttcgaggagcagaagctgccggtcaagaagaagacgcccaagggcgcgccgtccaccgcc
gaagcggtgcttgaggagctggcgctggactacccgctgcccaagctgatcatgcgccat
cgcggcatgaccaagctcaagagcacctacaccgacaagctgccgcagctggtcaacccg
accacgcgtcgcctgcacaccagctaccatcaggccgtcaccgccacggggcgtctgtcg
tcgtctgatccgaacctgcagaacatcccggtacgcagtgacgaggggcgtcgtatccgt
caggccttcatcgcgcgccccggctatcgtatcgtcgcggcggattactcgcagatcgag
ctgcgcatcatggcgcacctctccggtgacaagggtctgctttcggccttcgccgataac
cgcgacgtgcacgccgccaccgccgctgaagtcttcggcaccgaggaagcgcgtgtcacc
agtgaccagcgccgcagtgccaaggccatcaacttcgggctgatctacggcatgtccgcc
tggggcctctcgcgccagctggatatcgaacccggccaggccaagacctacatcgagcgc
tacttcgagcgttatccgggtgtcgccacctacatggaagacacgcgtcagctcgccgcc
gagcagggctacgtcgagaccatcttcggccgtcgcctctacctgccggaaatcggctca
cgcaatcacgcgcgtcgcagcgctgccgaacgcaccgccatcaacgccccgatgcaaggc
agcgccgccgacatcatcaagcgcgccatgatcgacgtggatgcctggctggcgggcagc
gacggtgtcgacagatacgacgccatgatggtcatgcaggtacacgatgaactcgtcttc
gaagtcgccgaagcgcaggtcgacgccttcatgaaagacgtcgcgcagcgcatgcagaat
gccgcctccctcgatgtcccgctgctcgtcgaagtcgagcaaggcgacaactgggaagaa
gcgcattaa
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