Cobetia amphilecti: LCW13_02495
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Entry
LCW13_02495 CDS
T07922
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
camh
Cobetia amphilecti
Pathway
camh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
camh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LCW13_02495 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
camh03400
]
LCW13_02495 (recB)
Enzymes [BR:
camh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LCW13_02495 (recB)
DNA repair and recombination proteins [BR:
camh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LCW13_02495 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
UBU49163
LinkDB
All DBs
Position
572529..576758
Genome browser
AA seq
1409 aa
AA seq
DB search
MSDTRVEDMRGVESGVRSGIAQDKEAAMSDEMDQGVQGQALDIPTLPLLGQHLIEASAGT
GKTFTLAALYVRLVLGPLPGQDAGVCYPRPLTPPEILVVTFTEAATAELRDRIRARLKQA
REALLERASPDPVLAKLLAPLLTPSPAEDAARLKAAAARRLDQAARLMDDAAIFTIHGFC
QRMLSRHAFDAGGRFGAELLQDGQSLLARCVEDYWRCEFYPLAREWQALIRGRWAGPDAL
GEELRGLLRDGTPRPLYRDGECLEAPHDLSELLGNAEQWRQQQEAARRAVEESFDEAAIR
AVMGEAFASKALNGNSYKEAELEPRLAATAAWLASGEHDFAADMLDSKKLCWLSQAKLEK
GTKKNCHTPRHPFFAALDMLAEVPAPDAVLLDQVAVHARDSVARALICEKRRLGLWEFSD
LLNDLDHALDPTLNGEASQRLARQIRQELPVAMIDEFQDTDPVQYRIFRRIYPQTAGDGP
TDDDAFSSDVGNDAGEAPSTLLMIGDPKQAIYAFRGADIDTYLAARKVTSSRFTLPRNFR
SSAAMVSAVNALFAQHQAPFGSEDIPFQPVEAQGTRTRLVLRHPDGREEATCALNLWWAS
GERLSADDHRRAMSGACRAQIQALLEGQQRLAAGEPGLVFMDGGDATPRGVAASDIAVLV
RNGREAAAVRGALAEGGIRSVYLSEKSSVFDTPEAFELLQLFEAVAHPRDDRRLRAALAT
RLLAEDLSLVERLAVDELAWEREVERFDGYHRDWQRRGVLPMLRGVMRDFRVGERLAARA
GGERALTDVLHLGELAQNAAQRLDGEQALLRWWHQALESGHEALDSDSLSQRLESDEGLV
RVVTIHKSKGLEYPIVLLPFMASFRAAEPDKNFGLLTLKQRWLASADVEGDDEGGDDEED
DNEEVPARRVDQEDDALDDSILVKKPSREAIAAADHARLMEDVRLLYVALTRPKFACWLG
LAPIGKGGFSKQLSLPSTAVGYLLGLSDTPDIEASAIEAALHGWCDQQSAGLARVSGLPA
PVGHEYQPPAERDQHFHGARHFAGGIEDDWWIASYTALLTDARQVTAALEDTADAADDRV
PEGATEIALEEGEQGLTRPDREVAGQSGPLLAGGLPMTVGEIHLHDFPRGPRPGTFLHGL
LEAVDLDRLGADDYRGELERLVGSRLHFGGFDASWQPRLTDWLEQALTRPLQGFEGEPIL
LNRLEAWLPELEFWLPAVHARSLPLDAVVTALEPLPRSRPRLAPRRMHGMLKGFIDLTFQ
SGGRWYVLDWKSNYLGERPEDYLGESLARAMVEHRYDLQYVLYTLALHRLLKARLGEDYD
YERCMGGVLYVFLRGLDAGGDSPALAVDEAHDLGNMATPGVFQRRPSQALIEALDLWLGG
DSSALDSLLLNTTDTSPLTQSGQQGAFDV
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgagcgataccagagtggaagacatgcgcggtgtggagagtggcgtgaggagtggcatc
gctcaggacaaggaagcggcaatgagtgacgagatggatcaaggcgtgcagggccaggcc
ctcgatattccgacgctgccgctgctcggtcagcacctgatcgaggcgagtgccggcacc
ggcaagaccttcaccctcgccgcgctctacgtgcggctggtgctcgggcccttgcccggc
caggacgcgggcgtctgctatccgcgcccgctgacgccgccggagatactggtggtgacc
ttcaccgaagccgccaccgcagagcttagagaccgcattcgggcgcgcctcaagcaggcg
cgtgaggcgctgctggagcgtgccagtcctgatccggtgctggccaagttgctcgcgccg
ctgctgacaccatcacccgccgaggacgcagcgcgcctcaaggctgccgcggcacggcgc
ctcgatcaggccgcgcgcctgatggatgacgccgccatcttcaccatccacggcttctgt
cagcgcatgctcagtcgacatgccttcgatgccggcgggcgcttcggcgccgagctgttg
caggacggccagtcgctgctggcgcgctgcgtcgaggattactggcgctgcgagttctat
ccgctggcccgcgaatggcaggcgttgatccgtgggcgttgggccgggcctgacgctttg
ggagaagagctgcgtggcctgctgcgggatggcacgccgcgcccgctgtaccgcgacggc
gaatgtcttgaggccccgcatgacctgagcgagctgctcggcaatgccgaacagtggcgt
cagcagcaggaggccgctcggcgcgccgtcgaggaaagtttcgatgaggcggccatccgc
gcggtgatgggtgaggccttcgccagcaaggccctcaacggcaacagctacaaggaggcc
gaactcgagcctcgcctggcggcgacggccgcctggcttgccagcggcgagcacgacttc
gccgctgacatgctcgacagcaagaagctgtgctggctgagtcaggccaagctcgagaag
ggcaccaagaagaactgccatacgccgcgccatcccttcttcgcggcgctggacatgctg
gccgaggtgcccgccccggacgccgtgctgctggatcaggtcgccgtgcatgcgcgtgac
agcgtcgcccgcgccctgatctgcgagaagcgccgcctcgggctgtgggaattctcggac
ctgctcaatgatctcgatcacgcgctggacccgacgctcaatggcgaggccagccagcgt
ctggcgcgccagatccgtcaggagctgccggtggcgatgatcgacgaattccaggacacc
gacccggtccagtaccgcatcttccggcgcatctatccgcagacggcgggcgatggcccg
accgacgacgatgccttcagcagtgatgtcggcaacgatgctggcgaggcgccaagcacg
ctgttgatgatcggtgaccccaagcaggccatctatgccttccgcggcgccgatatcgac
acctatctggcggcgcgcaaggtcaccagctcgcgcttcaccctgccgcgcaacttccgc
tccagcgccgcgatggtgtccgcggtgaatgccctgttcgcccagcatcaggcgcccttc
ggcagtgaggacattcccttccagccggtcgaggcccagggcacgcgcacccggctggtg
ctgcgtcatccggatggccgcgaagaggccacctgcgcgctgaatctgtggtgggccagc
ggtgagcgtctgagcgccgatgaccaccgccgtgccatgagtggtgcctgtcgcgcccag
atccaggccttgctcgaaggacagcagcgtctggcggcgggcgagccggggctggtgttc
atggacggaggcgatgcgacgccacgtggcgtggccgccagcgatatcgccgtgctggtg
cgcaacggccgcgaggctgcggcggtgcgtggcgcgctggccgaaggcggcattcgcagc
gtctatctgagcgagaagagctcggtattcgacacgccggaggccttcgaactgctgcag
ctgttcgaggccgtggcccatccgcgtgatgaccgccgtctgcgcgcggcgctggcgacg
cggctgctggccgaggatctctcgctggtcgaacgcctcgcggtggatgagctggcctgg
gagcgtgaagtcgagcgcttcgatggctatcaccgcgactggcagcggcgcggcgtgttg
ccgatgctgcgcggcgtgatgcgcgacttccgggtcggggagcggttggcggcgcgtgcc
gggggcgagcgcgccctgacggatgtgctgcaccttggcgagctggcccagaatgctgcc
cagcgcctcgatggcgagcaggcgttgctgcgctggtggcatcaggcgctggaatccggc
catgaagcgctggacagcgacagcctcagtcagcggctggaaagtgacgaggggctggtg
cgtgtcgtcaccatccacaagtccaaggggcttgagtatcccatcgtgctgctgccgttc
atggccagcttccgcgcggccgagccggacaaaaatttcggcctgctgaccctcaagcag
cgctggctggcttcggctgacgtggaaggtgatgacgagggaggcgatgacgaggaagac
gataacgaggaagtgcctgctcggagagtcgatcaggaggatgacgctctcgatgacagt
attctggtcaagaagccctccagggaggccatcgcggcggccgatcatgcacggctgatg
gaagatgtgcgtctgctctacgtggcgctgacgcgtcccaagttcgcctgctggctgggg
ctggcgcccatcggcaagggcggtttcagcaagcagctgagcctgccgtccaccgccgtc
ggctacctgctcggcctgagtgacaccccggatatcgaggccagcgccatcgaggccgcg
ctgcacggctggtgtgatcagcagtctgccggcctggcgcgcgtttccggcctgcccgca
ccagtaggccatgaatatcagcccccggcggagcgcgatcagcacttccacggcgcgcgc
cacttcgcgggcggtatcgaggatgactggtggatcgcctcctacactgccttgctcacc
gatgcccgtcaggtgacggcggcgctggaagacaccgccgatgccgcggatgaccgcgtg
cccgagggcgccaccgagatcgcgctggaagagggcgagcagggtctgacccgcccagac
cgcgaggtggcggggcagtccggcccgctgctggccggtggcctgccgatgacggtgggc
gagatccatctgcatgatttcccgcgcggaccgcgcccggggaccttcctgcatggtctg
ctggaggcggtggatctcgatcgcctcggcgcggatgactatcgcggcgagcttgaacgg
ctggtgggctcacggctgcatttcggtggcttcgatgccagttggcagccgcgcctcacc
gactggctggagcaggcgctgacccgcccgctgcagggcttcgagggcgagcctatcctg
ctcaaccggctggaggcctggctgccggagctggaattctggctgccggccgtgcacgca
cgcagtctgccgctggatgccgtggtcaccgcgctggaaccgctgccgcgctcgcggccc
aggctcgcgccacgccgcatgcacggcatgctcaagggcttcatcgatctgaccttccag
tccggcggccgctggtacgtgctggactggaagtccaactatctgggcgagcgccccgag
gattatcttggcgagtcgctggcccgcgccatggtcgagcaccgctacgacctgcaatac
gtgctctacaccctcgcgctgcatcgtctgctcaaggcgcgcctcggtgaggactacgat
tacgagcgctgcatgggcggggtgctgtatgtcttcctgcgtggcctggatgccggcggt
gactcacccgcgcttgcggtggatgaggcacatgatctgggcaatatggcgacgcccggt
gtcttccagcgccggccatcacaggcgctgatcgaggcgctggatctctggctgggcggc
gacagctccgcactggacagcctgctcctcaacaccaccgatacctcgccactcacccaa
agcggccagcagggggccttcgatgtctga
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